Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=10425

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=10450",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=10400",
    "results": [
        {
            "id": 10415,
            "identifier": "PC7_1623",
            "identifier_type": "str",
            "name": "Amine compound SLC transporters",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 10416,
            "identifier": "GO:0021698",
            "identifier_type": "str",
            "name": "cerebellar cortex structural organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021698",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 10417,
            "identifier": "648044",
            "identifier_type": "int",
            "name": "LOC648044",
            "properties": {
                "url": "http://identifiers.org/ncbigene/648044",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "guanine nucleotide binding protein (G protein), gamma 12-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 10418,
            "identifier": "6584",
            "identifier_type": "int",
            "name": "SLC22A5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6584",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "solute carrier family 22 (organic cation/carnitine transporter), member 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 10419,
            "identifier": "196441",
            "identifier_type": "int",
            "name": "ZFC3H1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/196441",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "zinc finger, C3H1-type containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 10420,
            "identifier": "GO:0042832",
            "identifier_type": "str",
            "name": "defense response to protozoan",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042832",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 10421,
            "identifier": "GO:0035295",
            "identifier_type": "str",
            "name": "tube development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035295",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 10422,
            "identifier": "GO:0006590",
            "identifier_type": "str",
            "name": "thyroid hormone generation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006590",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 10423,
            "identifier": "1288",
            "identifier_type": "int",
            "name": "COL4A6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1288",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "collagen, type IV, alpha 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 10424,
            "identifier": "10051",
            "identifier_type": "int",
            "name": "SMC4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10051",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "structural maintenance of chromosomes 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 10425,
            "identifier": "C0476397",
            "identifier_type": "str",
            "name": "Electroretinogram abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C0476397",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 10426,
            "identifier": "159090",
            "identifier_type": "int",
            "name": "FAM122B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/159090",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "family with sequence similarity 122B"
            },
            "metanode": "Gene"
        },
        {
            "id": 10427,
            "identifier": "3757",
            "identifier_type": "int",
            "name": "KCNH2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3757",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "potassium channel, voltage gated eag related subfamily H, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 10428,
            "identifier": "8408",
            "identifier_type": "int",
            "name": "ULK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8408",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "unc-51 like autophagy activating kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 10429,
            "identifier": "C0009062",
            "identifier_type": "str",
            "name": "Clostridial infection",
            "properties": {
                "url": "http://identifiers.org/umls/C0009062",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 10430,
            "identifier": "GO:0045026",
            "identifier_type": "str",
            "name": "plasma membrane fusion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045026",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 10431,
            "identifier": "UBERON:0001785",
            "identifier_type": "str",
            "name": "cranial nerve",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001785",
                "bto_id": "BTO:0001104",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D003391"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 10432,
            "identifier": "2242",
            "identifier_type": "int",
            "name": "FES",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2242",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "FES proto-oncogene, tyrosine kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 10433,
            "identifier": "404093",
            "identifier_type": "int",
            "name": "CUEDC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/404093",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "CUE domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 10434,
            "identifier": "548593",
            "identifier_type": "int",
            "name": "SLX1A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/548593",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 10435,
            "identifier": "4711",
            "identifier_type": "int",
            "name": "NDUFB5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4711",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 10436,
            "identifier": "C0235401",
            "identifier_type": "str",
            "name": "Glucose tolerance abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C0235401",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 10437,
            "identifier": "7164",
            "identifier_type": "int",
            "name": "TPD52L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7164",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "tumor protein D52-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 10438,
            "identifier": "DB01248",
            "identifier_type": "str",
            "name": "Docetaxel",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01248",
                "inchi": "InChI=1S/C43H53NO14/c1-22-26(55-37(51)32(48)30(24-15-11-9-12-16-24)44-38(52)58-39(3,4)5)20-43(53)35(56-36(50)25-17-13-10-14-18-25)33-41(8,34(49)31(47)29(22)40(43,6)7)27(46)19-28-42(33,21-54-28)57-23(2)45/h9-18,26-28,30-33,35,46-48,53H,19-21H2,1-8H3,(H,44,52)/t26-,27-,28+,30-,31+,32+,33-,35-,41+,42-,43+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZDZOTLJHXYCWBA-VCVYQWHSSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 10439,
            "identifier": "57186",
            "identifier_type": "int",
            "name": "RALGAPA2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57186",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "Ral GTPase activating protein, alpha subunit 2 (catalytic)"
            },
            "metanode": "Gene"
        }
    ]
}