Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=1075
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1100", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1050", "results": [ { "id": 1073, "identifier": "N0000000151", "identifier_type": "str", "name": "Histamine H2 Receptor Antagonists", "properties": { "url": "http://purl.bioontology.org/ontology/NDFRT/N0000000151", "source": "FDA via DrugCentral", "license": "CC BY 4.0", "class_type": "Mechanism of Action" }, "metanode": "Pharmacologic Class" }, { "id": 1074, "identifier": "GO:0051934", "identifier_type": "str", "name": "catecholamine uptake involved in synaptic transmission", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0051934", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1075, "identifier": "84632", "identifier_type": "int", "name": "AFAP1L2", "properties": { "url": "http://identifiers.org/ncbigene/84632", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "actin filament associated protein 1-like 2" }, "metanode": "Gene" }, { "id": 1076, "identifier": "GO:0019852", "identifier_type": "str", "name": "L-ascorbic acid metabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0019852", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1077, "identifier": "6779", "identifier_type": "int", "name": "STATH", "properties": { "url": "http://identifiers.org/ncbigene/6779", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "statherin" }, "metanode": "Gene" }, { "id": 1078, "identifier": "GO:0007198", "identifier_type": "str", "name": "adenylate cyclase-inhibiting serotonin receptor signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0007198", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1079, "identifier": "GO:0097102", "identifier_type": "str", "name": "endothelial tip cell fate specification", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0097102", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1080, "identifier": "GO:0060492", "identifier_type": "str", "name": "lung induction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060492", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1081, "identifier": "C0234975", "identifier_type": "str", "name": "Convulsions aggravated", "properties": { "url": "http://identifiers.org/umls/C0234975", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1082, "identifier": "338398", "identifier_type": "int", "name": "TAS2R60", "properties": { "url": "http://identifiers.org/ncbigene/338398", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "taste receptor, type 2, member 60" }, "metanode": "Gene" }, { "id": 1083, "identifier": "GO:0043224", "identifier_type": "str", "name": "nuclear SCF ubiquitin ligase complex", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0043224", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 1084, "identifier": "C0016927", "identifier_type": "str", "name": "Gagging", "properties": { "url": "http://identifiers.org/umls/C0016927", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1085, "identifier": "9990", "identifier_type": "int", "name": "SLC12A6", "properties": { "url": "http://identifiers.org/ncbigene/9990", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "15", "description": "solute carrier family 12 (potassium/chloride transporter), member 6" }, "metanode": "Gene" }, { "id": 1086, "identifier": "100131980", "identifier_type": "int", "name": "ZNF705G", "properties": { "url": "http://identifiers.org/ncbigene/100131980", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "zinc finger protein 705G" }, "metanode": "Gene" }, { "id": 1087, "identifier": "PC7_3326", "identifier_type": "str", "name": "Downstream signaling events of B Cell Receptor (BCR)", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 1088, "identifier": "105379545", "identifier_type": "int", "name": "LOC105379545", "properties": { "url": "http://identifiers.org/ncbigene/105379545", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "16", "description": "uncharacterized LOC105379545" }, "metanode": "Gene" }, { "id": 1089, "identifier": "GO:0050833", "identifier_type": "str", "name": "pyruvate transmembrane transporter activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0050833", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1090, "identifier": "3936", "identifier_type": "int", "name": "LCP1", "properties": { "url": "http://identifiers.org/ncbigene/3936", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "13", "description": "lymphocyte cytosolic protein 1 (L-plastin)" }, "metanode": "Gene" }, { "id": 1091, "identifier": "401563", "identifier_type": "int", "name": "C9orf139", "properties": { "url": "http://identifiers.org/ncbigene/401563", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "chromosome 9 open reading frame 139" }, "metanode": "Gene" }, { "id": 1092, "identifier": "GO:0032433", "identifier_type": "str", "name": "filopodium tip", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0032433", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 1093, "identifier": "GO:0009221", "identifier_type": "str", "name": "pyrimidine deoxyribonucleotide biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0009221", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1094, "identifier": "PC7_2670", "identifier_type": "str", "name": "Collagen formation", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 1095, "identifier": "646851", "identifier_type": "int", "name": "FAM227A", "properties": { "url": "http://identifiers.org/ncbigene/646851", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "22", "description": "family with sequence similarity 227, member A" }, "metanode": "Gene" }, { "id": 1096, "identifier": "GO:0048681", "identifier_type": "str", "name": "negative regulation of axon regeneration", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0048681", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1097, "identifier": "GO:0006788", "identifier_type": "str", "name": "heme oxidation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0006788", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "