Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=11100

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11125",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11075",
    "results": [
        {
            "id": 11091,
            "identifier": "GO:0035173",
            "identifier_type": "str",
            "name": "histone kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035173",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 11092,
            "identifier": "GO:0097114",
            "identifier_type": "str",
            "name": "NMDA glutamate receptor clustering",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097114",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11093,
            "identifier": "GO:0006006",
            "identifier_type": "str",
            "name": "glucose metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006006",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11094,
            "identifier": "GO:0051695",
            "identifier_type": "str",
            "name": "actin filament uncapping",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051695",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11095,
            "identifier": "5089",
            "identifier_type": "int",
            "name": "PBX2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5089",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "pre-B-cell leukemia homeobox 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11096,
            "identifier": "55127",
            "identifier_type": "int",
            "name": "HEATR1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55127",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "HEAT repeat containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11097,
            "identifier": "C0555358",
            "identifier_type": "str",
            "name": "Morbid thoughts",
            "properties": {
                "url": "http://identifiers.org/umls/C0555358",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11098,
            "identifier": "54973",
            "identifier_type": "int",
            "name": "CPSF3L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54973",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "cleavage and polyadenylation specific factor 3-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 11099,
            "identifier": "105375274",
            "identifier_type": "int",
            "name": "LOC105375274",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105375274",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "uncharacterized LOC105375274"
            },
            "metanode": "Gene"
        },
        {
            "id": 11100,
            "identifier": "22928",
            "identifier_type": "int",
            "name": "SEPHS2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22928",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "selenophosphate synthetase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11101,
            "identifier": "7430",
            "identifier_type": "int",
            "name": "EZR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7430",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "ezrin"
            },
            "metanode": "Gene"
        },
        {
            "id": 11102,
            "identifier": "GO:0051534",
            "identifier_type": "str",
            "name": "negative regulation of NFAT protein import into nucleus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051534",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11103,
            "identifier": "DB01656",
            "identifier_type": "str",
            "name": "Roflumilast",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01656",
                "inchi": "InChI=1S/C17H14Cl2F2N2O3/c18-11-6-22-7-12(19)15(11)23-16(24)10-3-4-13(26-17(20)21)14(5-10)25-8-9-1-2-9/h3-7,9,17H,1-2,8H2,(H,22,23,24)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MNDBXUUTURYVHR-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11104,
            "identifier": "GO:0015711",
            "identifier_type": "str",
            "name": "organic anion transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015711",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11105,
            "identifier": "26267",
            "identifier_type": "int",
            "name": "FBXO10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26267",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "F-box protein 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 11106,
            "identifier": "55809",
            "identifier_type": "int",
            "name": "TRERF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55809",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "transcriptional regulating factor 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11107,
            "identifier": "C0234543",
            "identifier_type": "str",
            "name": "Postictal state",
            "properties": {
                "url": "http://identifiers.org/umls/C0234543",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11108,
            "identifier": "GO:0086010",
            "identifier_type": "str",
            "name": "membrane depolarization during action potential",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0086010",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11109,
            "identifier": "DB00361",
            "identifier_type": "str",
            "name": "Vinorelbine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00361",
                "inchi": "InChI=1S/C45H54N4O8/c1-8-27-19-28-22-44(40(51)55-6,36-30(25-48(23-27)24-28)29-13-10-11-14-33(29)46-36)32-20-31-34(21-35(32)54-5)47(4)38-43(31)16-18-49-17-12-15-42(9-2,37(43)49)39(57-26(3)50)45(38,53)41(52)56-7/h10-15,19-21,28,37-39,46,53H,8-9,16-18,22-25H2,1-7H3/t28-,37-,38+,39+,42+,43+,44-,45+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=GBABOYUKABKIAF-GHYRFKGUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11533,
            "identifier": "GO:0033149",
            "identifier_type": "str",
            "name": "FFAT motif binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033149",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 11110,
            "identifier": "GO:0051588",
            "identifier_type": "str",
            "name": "regulation of neurotransmitter transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051588",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11111,
            "identifier": "9126",
            "identifier_type": "int",
            "name": "SMC3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9126",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "structural maintenance of chromosomes 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 11112,
            "identifier": "282679",
            "identifier_type": "int",
            "name": "AQP11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/282679",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "aquaporin 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 11113,
            "identifier": "C0007780",
            "identifier_type": "str",
            "name": "Cerebral artery embolism",
            "properties": {
                "url": "http://identifiers.org/umls/C0007780",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11114,
            "identifier": "158293",
            "identifier_type": "int",
            "name": "FAM120AOS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/158293",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "family with sequence similarity 120A opposite strand"
            },
            "metanode": "Gene"
        }
    ]
}