Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=11575

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11600",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11550",
    "results": [
        {
            "id": 11566,
            "identifier": "3892",
            "identifier_type": "int",
            "name": "KRT86",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3892",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "keratin 86, type II"
            },
            "metanode": "Gene"
        },
        {
            "id": 11567,
            "identifier": "GO:0070670",
            "identifier_type": "str",
            "name": "response to interleukin-4",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070670",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11568,
            "identifier": "10500",
            "identifier_type": "int",
            "name": "SEMA6C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10500",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C"
            },
            "metanode": "Gene"
        },
        {
            "id": 11569,
            "identifier": "10203",
            "identifier_type": "int",
            "name": "CALCRL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10203",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "calcitonin receptor-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 11780,
            "identifier": "C0162275",
            "identifier_type": "str",
            "name": "Ketonuria",
            "properties": {
                "url": "http://identifiers.org/umls/C0162275",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11570,
            "identifier": "11234",
            "identifier_type": "int",
            "name": "HPS5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11234",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "Hermansky-Pudlak syndrome 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 11571,
            "identifier": "GO:2000644",
            "identifier_type": "str",
            "name": "regulation of receptor catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000644",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11572,
            "identifier": "DB00915",
            "identifier_type": "str",
            "name": "Amantadine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00915",
                "inchi": "InChI=1S/C10H17N/c11-10-4-7-1-8(5-10)3-9(2-7)6-10/h7-9H,1-6,11H2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=DKNWSYNQZKUICI-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11573,
            "identifier": "GO:0050839",
            "identifier_type": "str",
            "name": "cell adhesion molecule binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050839",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 11574,
            "identifier": "PC7_6001",
            "identifier_type": "str",
            "name": "O-linked glycosylation of mucins",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 11575,
            "identifier": "DB04898",
            "identifier_type": "str",
            "name": "Ximelagatran",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB04898",
                "inchi": "InChI=1S/C24H35N5O5/c1-2-34-20(30)15-26-21(17-6-4-3-5-7-17)24(32)29-13-12-19(29)23(31)27-14-16-8-10-18(11-9-16)22(25)28-33/h8-11,17,19,21,26,33H,2-7,12-15H2,1H3,(H2,25,28)(H,27,31)/t19-,21+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZXIBCJHYVWYIKI-PZJWPPBQSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11576,
            "identifier": "GO:0060033",
            "identifier_type": "str",
            "name": "anatomical structure regression",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060033",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11577,
            "identifier": "100101467",
            "identifier_type": "int",
            "name": "ZSCAN30",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100101467",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "zinc finger and SCAN domain containing 30"
            },
            "metanode": "Gene"
        },
        {
            "id": 11578,
            "identifier": "WP111_r82216",
            "identifier_type": "str",
            "name": "Electron Transport Chain",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP111_r82216",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 11579,
            "identifier": "C0741553",
            "identifier_type": "str",
            "name": "Hemorrhage abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C0741553",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11580,
            "identifier": "6787",
            "identifier_type": "int",
            "name": "NEK4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6787",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "NIMA-related kinase 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 11581,
            "identifier": "56937",
            "identifier_type": "int",
            "name": "PMEPA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56937",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "prostate transmembrane protein, androgen induced 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11582,
            "identifier": "DB01209",
            "identifier_type": "str",
            "name": "Dezocine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01209",
                "inchi": "InChI=1S/C16H23NO/c1-16-8-4-2-3-5-12(15(16)17)9-11-6-7-13(18)10-14(11)16/h6-7,10,12,15,18H,2-5,8-9,17H2,1H3/t12-,15-,16+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VTMVHDZWSFQSQP-VBNZEHGJSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11583,
            "identifier": "D000648",
            "identifier_type": "str",
            "name": "Amnesia, Retrograde",
            "properties": {
                "url": "http://identifiers.org/mesh/D000648",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 11584,
            "identifier": "GO:0016763",
            "identifier_type": "str",
            "name": "transferase activity, transferring pentosyl groups",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016763",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 11585,
            "identifier": "C0009917",
            "identifier_type": "str",
            "name": "Muscle contracture",
            "properties": {
                "url": "http://identifiers.org/umls/C0009917",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11586,
            "identifier": "344901",
            "identifier_type": "int",
            "name": "OSTN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/344901",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "osteocrin"
            },
            "metanode": "Gene"
        },
        {
            "id": 11587,
            "identifier": "10126",
            "identifier_type": "int",
            "name": "DNAL4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10126",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "dynein, axonemal, light chain 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 11588,
            "identifier": "GO:0042078",
            "identifier_type": "str",
            "name": "germ-line stem cell division",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042078",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11589,
            "identifier": "GO:0008146",
            "identifier_type": "str",
            "name": "sulfotransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008146",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}