Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=11750

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11775",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11725",
    "results": [
        {
            "id": 11738,
            "identifier": "51409",
            "identifier_type": "int",
            "name": "HEMK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51409",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "HemK methyltransferase family member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11739,
            "identifier": "7525",
            "identifier_type": "int",
            "name": "YES1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7525",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "YES proto-oncogene 1, Src family tyrosine kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 11740,
            "identifier": "23322",
            "identifier_type": "int",
            "name": "RPGRIP1L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23322",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "RPGRIP1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 11741,
            "identifier": "401024",
            "identifier_type": "int",
            "name": "FSIP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/401024",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "fibrous sheath interacting protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11742,
            "identifier": "DB00274",
            "identifier_type": "str",
            "name": "Cefmetazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00274",
                "inchi": "InChI=1S/C15H17N7O5S3/c1-21-14(18-19-20-21)30-6-8-5-29-13-15(27-2,17-9(23)7-28-4-3-16)12(26)22(13)10(8)11(24)25/h13H,4-7H2,1-2H3,(H,17,23)(H,24,25)/t13-,15+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SNBUBQHDYVFSQF-HIFRSBDPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11743,
            "identifier": "169436",
            "identifier_type": "int",
            "name": "STKLD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/169436",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "serine/threonine kinase-like domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11744,
            "identifier": "440087",
            "identifier_type": "int",
            "name": "SMCO3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/440087",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "single-pass membrane protein with coiled-coil domains 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 11745,
            "identifier": "84290",
            "identifier_type": "int",
            "name": "CAPNS2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84290",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "calpain, small subunit 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11746,
            "identifier": "26164",
            "identifier_type": "int",
            "name": "MTG2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26164",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "mitochondrial ribosome-associated GTPase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11747,
            "identifier": "199720",
            "identifier_type": "int",
            "name": "GGN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/199720",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "gametogenetin"
            },
            "metanode": "Gene"
        },
        {
            "id": 11748,
            "identifier": "GO:0006511",
            "identifier_type": "str",
            "name": "ubiquitin-dependent protein catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006511",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11749,
            "identifier": "GO:0002768",
            "identifier_type": "str",
            "name": "immune response-regulating cell surface receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002768",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11750,
            "identifier": "C2939447",
            "identifier_type": "str",
            "name": "Right ventricular failure",
            "properties": {
                "url": "http://identifiers.org/umls/C2939447",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11751,
            "identifier": "C0085654",
            "identifier_type": "str",
            "name": "Injection site granuloma",
            "properties": {
                "url": "http://identifiers.org/umls/C0085654",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11752,
            "identifier": "6181",
            "identifier_type": "int",
            "name": "RPLP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6181",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "ribosomal protein, large, P2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11753,
            "identifier": "55454",
            "identifier_type": "int",
            "name": "CSGALNACT2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55454",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "chondroitin sulfate N-acetylgalactosaminyltransferase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11754,
            "identifier": "56203",
            "identifier_type": "int",
            "name": "LMOD3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56203",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "leiomodin 3 (fetal)"
            },
            "metanode": "Gene"
        },
        {
            "id": 11755,
            "identifier": "GO:0051105",
            "identifier_type": "str",
            "name": "regulation of DNA ligation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051105",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11756,
            "identifier": "55706",
            "identifier_type": "int",
            "name": "NDC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55706",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "NDC1 transmembrane nucleoporin"
            },
            "metanode": "Gene"
        },
        {
            "id": 11757,
            "identifier": "GO:2000816",
            "identifier_type": "str",
            "name": "negative regulation of mitotic sister chromatid separation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000816",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11758,
            "identifier": "79864",
            "identifier_type": "int",
            "name": "C11orf63",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79864",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "chromosome 11 open reading frame 63"
            },
            "metanode": "Gene"
        },
        {
            "id": 11759,
            "identifier": "PC7_4744",
            "identifier_type": "str",
            "name": "Inositol transporters",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 11760,
            "identifier": "1013",
            "identifier_type": "int",
            "name": "CDH15",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1013",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "cadherin 15, type 1, M-cadherin (myotubule)"
            },
            "metanode": "Gene"
        },
        {
            "id": 11761,
            "identifier": "140576",
            "identifier_type": "int",
            "name": "S100A16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/140576",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "S100 calcium binding protein A16"
            },
            "metanode": "Gene"
        },
        {
            "id": 11762,
            "identifier": "51035",
            "identifier_type": "int",
            "name": "UBXN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51035",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "UBX domain protein 1"
            },
            "metanode": "Gene"
        }
    ]
}