Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=11850

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11875",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=11825",
    "results": [
        {
            "id": 11840,
            "identifier": "171586",
            "identifier_type": "int",
            "name": "ABHD3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/171586",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "abhydrolase domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 11841,
            "identifier": "101929256",
            "identifier_type": "int",
            "name": "LOC101929256",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101929256",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "uncharacterized LOC101929256"
            },
            "metanode": "Gene"
        },
        {
            "id": 11842,
            "identifier": "378884",
            "identifier_type": "int",
            "name": "NHLRC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/378884",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "NHL repeat containing E3 ubiquitin protein ligase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11843,
            "identifier": "PC7_3903",
            "identifier_type": "str",
            "name": "Ficolins bind to repetitive carbohydrate structures on the target cell surface",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 11844,
            "identifier": "C0854113",
            "identifier_type": "str",
            "name": "Mucosal dryness",
            "properties": {
                "url": "http://identifiers.org/umls/C0854113",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11845,
            "identifier": "710",
            "identifier_type": "int",
            "name": "SERPING1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/710",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "serpin peptidase inhibitor, clade G (C1 inhibitor), member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11846,
            "identifier": "DB00171",
            "identifier_type": "str",
            "name": "Adenosine triphosphate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00171",
                "inchi": "InChI=1/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZKHQWZAMYRWXGA-YPLCUDRINA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11847,
            "identifier": "C0473237",
            "identifier_type": "str",
            "name": "Frank hematuria",
            "properties": {
                "url": "http://identifiers.org/umls/C0473237",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11848,
            "identifier": "219981",
            "identifier_type": "int",
            "name": "OR5A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/219981",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "olfactory receptor, family 5, subfamily A, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11849,
            "identifier": "GO:0045606",
            "identifier_type": "str",
            "name": "positive regulation of epidermal cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045606",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11850,
            "identifier": "23207",
            "identifier_type": "int",
            "name": "PLEKHM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23207",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "pleckstrin homology domain containing, family M (with RUN domain) member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11851,
            "identifier": "3163",
            "identifier_type": "int",
            "name": "HMOX2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3163",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "heme oxygenase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 11852,
            "identifier": "GO:0006406",
            "identifier_type": "str",
            "name": "mRNA export from nucleus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006406",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11853,
            "identifier": "57724",
            "identifier_type": "int",
            "name": "EPG5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57724",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "ectopic P-granules autophagy protein 5 homolog (C. elegans)"
            },
            "metanode": "Gene"
        },
        {
            "id": 11855,
            "identifier": "51236",
            "identifier_type": "int",
            "name": "HGH1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51236",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "HGH1 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 11856,
            "identifier": "105372478",
            "identifier_type": "int",
            "name": "LOC105372478",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105372478",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "taste receptor type 1 member 2-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 11857,
            "identifier": "29765",
            "identifier_type": "int",
            "name": "TMOD4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29765",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "tropomodulin 4 (muscle)"
            },
            "metanode": "Gene"
        },
        {
            "id": 11858,
            "identifier": "GO:0045834",
            "identifier_type": "str",
            "name": "positive regulation of lipid metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045834",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11859,
            "identifier": "23471",
            "identifier_type": "int",
            "name": "TRAM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23471",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "translocation associated membrane protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11860,
            "identifier": "7957",
            "identifier_type": "int",
            "name": "EPM2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7957",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)"
            },
            "metanode": "Gene"
        },
        {
            "id": 11861,
            "identifier": "C0009595",
            "identifier_type": "str",
            "name": "Obsessive-compulsive personality disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0009595",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 11862,
            "identifier": "84439",
            "identifier_type": "int",
            "name": "HHIPL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84439",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "HHIP-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 11863,
            "identifier": "GO:0009126",
            "identifier_type": "str",
            "name": "purine nucleoside monophosphate metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009126",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 11864,
            "identifier": "DB00730",
            "identifier_type": "str",
            "name": "Thiabendazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00730",
                "inchi": "InChI=1S/C10H7N3S/c1-2-4-8-7(3-1)12-10(13-8)9-5-14-6-11-9/h1-6H,(H,12,13)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WJCNZQLZVWNLKY-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 11865,
            "identifier": "6314",
            "identifier_type": "int",
            "name": "ATXN7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6314",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "ataxin 7"
            },
            "metanode": "Gene"
        }
    ]
}