Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=1200

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1225",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1175",
    "results": [
        {
            "id": 1198,
            "identifier": "DB01173",
            "identifier_type": "str",
            "name": "Orphenadrine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01173",
                "inchi": "InChI=1S/C18H23NO/c1-15-9-7-8-12-17(15)18(20-14-13-19(2)3)16-10-5-4-6-11-16/h4-12,18H,13-14H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=QVYRGXJJSLMXQH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 1199,
            "identifier": "56950",
            "identifier_type": "int",
            "name": "SMYD2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56950",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "SET and MYND domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 1200,
            "identifier": "196513",
            "identifier_type": "int",
            "name": "DCP1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/196513",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "decapping mRNA 1B"
            },
            "metanode": "Gene"
        },
        {
            "id": 1201,
            "identifier": "C0025322",
            "identifier_type": "str",
            "name": "Premature menopause",
            "properties": {
                "url": "http://identifiers.org/umls/C0025322",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1202,
            "identifier": "388553",
            "identifier_type": "int",
            "name": "BHMG1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/388553",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "basic helix-loop-helix and HMG box domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 1203,
            "identifier": "GO:0002528",
            "identifier_type": "str",
            "name": "regulation of vascular permeability involved in acute inflammatory response",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002528",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 1204,
            "identifier": "1616",
            "identifier_type": "int",
            "name": "DAXX",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1616",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "death-domain associated protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 1205,
            "identifier": "403339",
            "identifier_type": "int",
            "name": "DEFB133",
            "properties": {
                "url": "http://identifiers.org/ncbigene/403339",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "defensin, beta 133"
            },
            "metanode": "Gene"
        },
        {
            "id": 1206,
            "identifier": "PC7_7230",
            "identifier_type": "str",
            "name": "SCF(Skp2)-mediated degradation of p27/p21",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 1207,
            "identifier": "GO:0090073",
            "identifier_type": "str",
            "name": "positive regulation of protein homodimerization activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090073",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 1208,
            "identifier": "C0034040",
            "identifier_type": "str",
            "name": "Postpartum disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0034040",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1209,
            "identifier": "4085",
            "identifier_type": "int",
            "name": "MAD2L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4085",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "MAD2 mitotic arrest deficient-like 1 (yeast)"
            },
            "metanode": "Gene"
        },
        {
            "id": 1210,
            "identifier": "8480",
            "identifier_type": "int",
            "name": "RAE1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8480",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "ribonucleic acid export 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 1211,
            "identifier": "C0004763",
            "identifier_type": "str",
            "name": "Barrett's oesophagus",
            "properties": {
                "url": "http://identifiers.org/umls/C0004763",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1212,
            "identifier": "C0859037",
            "identifier_type": "str",
            "name": "Feeling of residual urine",
            "properties": {
                "url": "http://identifiers.org/umls/C0859037",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1213,
            "identifier": "2314",
            "identifier_type": "int",
            "name": "FLII",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2314",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "flightless I actin binding protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 1214,
            "identifier": "11077",
            "identifier_type": "int",
            "name": "HSF2BP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11077",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "heat shock transcription factor 2 binding protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 1215,
            "identifier": "DB00479",
            "identifier_type": "str",
            "name": "Amikacin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00479",
                "inchi": "InChI=1S/C22H43N5O13/c23-2-1-8(29)20(36)27-7-3-6(25)18(39-22-16(34)15(33)13(31)9(4-24)37-22)17(35)19(7)40-21-14(32)11(26)12(30)10(5-28)38-21/h6-19,21-22,28-35H,1-5,23-26H2,(H,27,36)/t6-,7+,8-,9+,10+,11-,12+,13+,14+,15-,16+,17-,18+,19-,21+,22+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LKCWBDHBTVXHDL-RMDFUYIESA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 1216,
            "identifier": "GO:0002161",
            "identifier_type": "str",
            "name": "aminoacyl-tRNA editing activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002161",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 1217,
            "identifier": "GO:0005049",
            "identifier_type": "str",
            "name": "nuclear export signal receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005049",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 1218,
            "identifier": "4783",
            "identifier_type": "int",
            "name": "NFIL3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4783",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "nuclear factor, interleukin 3 regulated"
            },
            "metanode": "Gene"
        },
        {
            "id": 1219,
            "identifier": "54805",
            "identifier_type": "int",
            "name": "CNNM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54805",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "cyclin and CBS domain divalent metal cation transport mediator 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 1220,
            "identifier": "C0576093",
            "identifier_type": "str",
            "name": "Genu valgum",
            "properties": {
                "url": "http://identifiers.org/umls/C0576093",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1221,
            "identifier": "D054078",
            "identifier_type": "str",
            "name": "Mevalonate Kinase Deficiency",
            "properties": {
                "url": "http://identifiers.org/mesh/D054078",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 1222,
            "identifier": "PC7_7707",
            "identifier_type": "str",
            "name": "Sumoylation by RanBP2 regulates transcriptional repression",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        }
    ]
}