Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=12225

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12250",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12200",
    "results": [
        {
            "id": 12214,
            "identifier": "6857",
            "identifier_type": "int",
            "name": "SYT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6857",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "synaptotagmin I"
            },
            "metanode": "Gene"
        },
        {
            "id": 12215,
            "identifier": "C0858635",
            "identifier_type": "str",
            "name": "Pharyngolaryngeal pain",
            "properties": {
                "url": "http://identifiers.org/umls/C0858635",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12216,
            "identifier": "101930123",
            "identifier_type": "int",
            "name": "LOC101930123",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101930123",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "eukaryotic elongation factor 2 kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 12217,
            "identifier": "GO:0030369",
            "identifier_type": "str",
            "name": "ICAM-3 receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030369",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 12218,
            "identifier": "GO:0070383",
            "identifier_type": "str",
            "name": "DNA cytosine deamination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070383",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12219,
            "identifier": "10196",
            "identifier_type": "int",
            "name": "PRMT3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10196",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "protein arginine methyltransferase 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 12220,
            "identifier": "5725",
            "identifier_type": "int",
            "name": "PTBP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5725",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "polypyrimidine tract binding protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 12221,
            "identifier": "GO:0003358",
            "identifier_type": "str",
            "name": "noradrenergic neuron development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003358",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12222,
            "identifier": "353513",
            "identifier_type": "int",
            "name": "VCY1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/353513",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "Y",
                "description": "variable charge, Y-linked 1B"
            },
            "metanode": "Gene"
        },
        {
            "id": 12223,
            "identifier": "GO:0009148",
            "identifier_type": "str",
            "name": "pyrimidine nucleoside triphosphate biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009148",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12224,
            "identifier": "100128124",
            "identifier_type": "int",
            "name": "HGC6.3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100128124",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "uncharacterized LOC100128124"
            },
            "metanode": "Gene"
        },
        {
            "id": 12225,
            "identifier": "GO:0045661",
            "identifier_type": "str",
            "name": "regulation of myoblast differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045661",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12226,
            "identifier": "DB00644",
            "identifier_type": "str",
            "name": "Gonadorelin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00644",
                "inchi": "InChI=1S/C55H75N17O13/c1-29(2)19-38(49(80)67-37(9-5-17-60-55(57)58)54(85)72-18-6-10-43(72)53(84)62-25-44(56)75)66-46(77)26-63-47(78)39(20-30-11-13-33(74)14-12-30)68-52(83)42(27-73)71-50(81)40(21-31-23-61-35-8-4-3-7-34(31)35)69-51(82)41(22-32-24-59-28-64-32)70-48(79)36-15-16-45(76)65-36/h3-4,7-8,11-14,23-24,28-29,36-43,61,73-74H,5-6,9-10,15-22,25-27H2,1-2H3,(H2,56,75)(H,59,64)(H,62,84)(H,63,78)(H,65,76)(H,66,77)(H,67,80)(H,68,83)(H,69,82)(H,70,79)(H,71,81)(H4,57,58,60)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XLXSAKCOAKORKW-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12227,
            "identifier": "D060545",
            "identifier_type": "str",
            "name": "Pudendal Neuralgia",
            "properties": {
                "url": "http://identifiers.org/mesh/D060545",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 12228,
            "identifier": "3902",
            "identifier_type": "int",
            "name": "LAG3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3902",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "lymphocyte-activation gene 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 12229,
            "identifier": "8553",
            "identifier_type": "int",
            "name": "BHLHE40",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8553",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "basic helix-loop-helix family, member e40"
            },
            "metanode": "Gene"
        },
        {
            "id": 12230,
            "identifier": "GO:1903223",
            "identifier_type": "str",
            "name": "positive regulation of oxidative stress-induced neuron death",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903223",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12231,
            "identifier": "727851",
            "identifier_type": "int",
            "name": "RGPD8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/727851",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "RANBP2-like and GRIP domain containing 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 12232,
            "identifier": "C1696157",
            "identifier_type": "str",
            "name": "Gastrointestinal stoma complication",
            "properties": {
                "url": "http://identifiers.org/umls/C1696157",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12233,
            "identifier": "10894",
            "identifier_type": "int",
            "name": "LYVE1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10894",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "lymphatic vessel endothelial hyaluronan receptor 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 12234,
            "identifier": "GO:0019902",
            "identifier_type": "str",
            "name": "phosphatase binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019902",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 12235,
            "identifier": "C0006144",
            "identifier_type": "str",
            "name": "Breast cyst",
            "properties": {
                "url": "http://identifiers.org/umls/C0006144",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12236,
            "identifier": "DB00175",
            "identifier_type": "str",
            "name": "Pravastatin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00175",
                "inchi": "InChI=1S/C23H36O7/c1-4-13(2)23(29)30-20-11-17(25)9-15-6-5-14(3)19(22(15)20)8-7-16(24)10-18(26)12-21(27)28/h5-6,9,13-14,16-20,22,24-26H,4,7-8,10-12H2,1-3H3,(H,27,28)/t13-,14-,16+,17+,18+,19-,20-,22-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=TUZYXOIXSAXUGO-PZAWKZKUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12237,
            "identifier": "GO:0006614",
            "identifier_type": "str",
            "name": "SRP-dependent cotranslational protein targeting to membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006614",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12238,
            "identifier": "GO:0015020",
            "identifier_type": "str",
            "name": "glucuronosyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015020",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}