Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=1225

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1250",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1200",
    "results": [
        {
            "id": 1223,
            "identifier": "22878",
            "identifier_type": "int",
            "name": "TRAPPC8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22878",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "trafficking protein particle complex 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 1224,
            "identifier": "7364",
            "identifier_type": "int",
            "name": "UGT2B7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7364",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "UDP glucuronosyltransferase 2 family, polypeptide B7"
            },
            "metanode": "Gene"
        },
        {
            "id": 1225,
            "identifier": "C2937222",
            "identifier_type": "str",
            "name": "Proctitis ulcerative",
            "properties": {
                "url": "http://identifiers.org/umls/C2937222",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1226,
            "identifier": "GO:0044331",
            "identifier_type": "str",
            "name": "cell-cell adhesion mediated by cadherin",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044331",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 1227,
            "identifier": "140456",
            "identifier_type": "int",
            "name": "ASB11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/140456",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "ankyrin repeat and SOCS box containing 11, E3 ubiquitin protein ligase"
            },
            "metanode": "Gene"
        },
        {
            "id": 1228,
            "identifier": "GO:0072112",
            "identifier_type": "str",
            "name": "glomerular visceral epithelial cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072112",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 1229,
            "identifier": "C0205929",
            "identifier_type": "str",
            "name": "Anal fistula",
            "properties": {
                "url": "http://identifiers.org/umls/C0205929",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1230,
            "identifier": "55759",
            "identifier_type": "int",
            "name": "WDR12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55759",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "WD repeat domain 12"
            },
            "metanode": "Gene"
        },
        {
            "id": 1231,
            "identifier": "GO:0032000",
            "identifier_type": "str",
            "name": "positive regulation of fatty acid beta-oxidation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032000",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 1232,
            "identifier": "9060",
            "identifier_type": "int",
            "name": "PAPSS2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9060",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "3'-phosphoadenosine 5'-phosphosulfate synthase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 1233,
            "identifier": "GO:0002437",
            "identifier_type": "str",
            "name": "inflammatory response to antigenic stimulus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002437",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 1234,
            "identifier": "728358",
            "identifier_type": "int",
            "name": "DEFA1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/728358",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "defensin, alpha 1B"
            },
            "metanode": "Gene"
        },
        {
            "id": 1235,
            "identifier": "GO:0016661",
            "identifier_type": "str",
            "name": "oxidoreductase activity, acting on other nitrogenous compounds as donors",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016661",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 1236,
            "identifier": "118924",
            "identifier_type": "int",
            "name": "FRA10AC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/118924",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 1237,
            "identifier": "127687",
            "identifier_type": "int",
            "name": "C1orf122",
            "properties": {
                "url": "http://identifiers.org/ncbigene/127687",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "chromosome 1 open reading frame 122"
            },
            "metanode": "Gene"
        },
        {
            "id": 1238,
            "identifier": "GO:0035032",
            "identifier_type": "str",
            "name": "phosphatidylinositol 3-kinase complex, class III",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035032",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 1239,
            "identifier": "2894",
            "identifier_type": "int",
            "name": "GRID1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2894",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "glutamate receptor, ionotropic, delta 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 1240,
            "identifier": "C0004153",
            "identifier_type": "str",
            "name": "Atherosclerosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0004153",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1241,
            "identifier": "57455",
            "identifier_type": "int",
            "name": "REXO1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57455",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "REX1, RNA exonuclease 1 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 1242,
            "identifier": "6201",
            "identifier_type": "int",
            "name": "RPS7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6201",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "ribosomal protein S7"
            },
            "metanode": "Gene"
        },
        {
            "id": 1243,
            "identifier": "GO:0043034",
            "identifier_type": "str",
            "name": "costamere",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043034",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 1244,
            "identifier": "C0700225",
            "identifier_type": "str",
            "name": "Serum creatinine increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0700225",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 1245,
            "identifier": "UBERON:0002512",
            "identifier_type": "str",
            "name": "corpus luteum",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002512",
                "bto_id": "BTO:0000292",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D003338"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 1246,
            "identifier": "5347",
            "identifier_type": "int",
            "name": "PLK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5347",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "polo-like kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 1247,
            "identifier": "DB00050",
            "identifier_type": "str",
            "name": "Cetrorelix",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00050",
                "inchi": "InChI=1S/C70H92ClN17O14/c1-39(2)31-52(61(94)82-51(15-9-28-77-69(73)74)68(101)88-30-10-16-58(88)67(100)79-40(3)59(72)92)83-60(93)50(14-8-29-78-70(75)102)81-63(96)54(34-43-20-25-49(91)26-21-43)86-66(99)57(38-89)87-65(98)56(36-45-11-7-27-76-37-45)85-64(97)55(33-42-18-23-48(71)24-19-42)84-62(95)53(80-41(4)90)35-44-17-22-46-12-5-6-13-47(46)32-44/h5-7,11-13,17-27,32,37,39-40,50-58,89,91H,8-10,14-16,28-31,33-36,38H2,1-4H3,(H2,72,92)(H,79,100)(H,80,90)(H,81,96)(H,82,94)(H,83,93)(H,84,95)(H,85,97)(H,86,99)(H,87,98)(H4,73,74,77)(H3,75,78,102)/t40-,50-,51+,52+,53-,54+,55-,56-,57+,58+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SBNPWPIBESPSIF-MHWMIDJBSA-N"
            },
            "metanode": "Compound"
        }
    ]
}