Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=12675

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12700",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12650",
    "results": [
        {
            "id": 12665,
            "identifier": "28973",
            "identifier_type": "int",
            "name": "MRPS18B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/28973",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "mitochondrial ribosomal protein S18B"
            },
            "metanode": "Gene"
        },
        {
            "id": 12666,
            "identifier": "4952",
            "identifier_type": "int",
            "name": "OCRL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4952",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "oculocerebrorenal syndrome of Lowe"
            },
            "metanode": "Gene"
        },
        {
            "id": 12667,
            "identifier": "C0024894",
            "identifier_type": "str",
            "name": "Mastitis",
            "properties": {
                "url": "http://identifiers.org/umls/C0024894",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12668,
            "identifier": "C0349464",
            "identifier_type": "str",
            "name": "Wernicke-Korsakoff syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C0349464",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12669,
            "identifier": "GO:0018992",
            "identifier_type": "str",
            "name": "germ-line sex determination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0018992",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12670,
            "identifier": "399671",
            "identifier_type": "int",
            "name": "HEATR4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/399671",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "HEAT repeat containing 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 12671,
            "identifier": "GO:0055078",
            "identifier_type": "str",
            "name": "sodium ion homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0055078",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12672,
            "identifier": "DB00640",
            "identifier_type": "str",
            "name": "Adenosine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00640",
                "inchi": "InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OIRDTQYFTABQOQ-KQYNXXCUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12673,
            "identifier": "22807",
            "identifier_type": "int",
            "name": "IKZF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22807",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "IKAROS family zinc finger 2 (Helios)"
            },
            "metanode": "Gene"
        },
        {
            "id": 12674,
            "identifier": "7421",
            "identifier_type": "int",
            "name": "VDR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7421",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "vitamin D (1,25- dihydroxyvitamin D3) receptor"
            },
            "metanode": "Gene"
        },
        {
            "id": 12675,
            "identifier": "53347",
            "identifier_type": "int",
            "name": "UBASH3A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/53347",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "ubiquitin associated and SH3 domain containing A"
            },
            "metanode": "Gene"
        },
        {
            "id": 12676,
            "identifier": "GO:0071955",
            "identifier_type": "str",
            "name": "recycling endosome to Golgi transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071955",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12677,
            "identifier": "DB00872",
            "identifier_type": "str",
            "name": "Conivaptan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00872",
                "inchi": "InChI=1S/C32H26N4O2/c1-21-33-28-19-20-36(29-14-8-7-13-27(29)30(28)34-21)32(38)23-15-17-24(18-16-23)35-31(37)26-12-6-5-11-25(26)22-9-3-2-4-10-22/h2-18H,19-20H2,1H3,(H,33,34)(H,35,37)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=IKENVDNFQMCRTR-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12678,
            "identifier": "26130",
            "identifier_type": "int",
            "name": "GAPVD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26130",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "GTPase activating protein and VPS9 domains 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 12679,
            "identifier": "55800",
            "identifier_type": "int",
            "name": "SCN3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55800",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "sodium channel, voltage gated, type III beta subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 12680,
            "identifier": "GO:0044794",
            "identifier_type": "str",
            "name": "positive regulation by host of viral process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044794",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12681,
            "identifier": "GO:1901837",
            "identifier_type": "str",
            "name": "negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901837",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12682,
            "identifier": "C0155947",
            "identifier_type": "str",
            "name": "Dentofacial anomaly",
            "properties": {
                "url": "http://identifiers.org/umls/C0155947",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12683,
            "identifier": "105371424",
            "identifier_type": "int",
            "name": "LOC105371424",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105371424",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "uncharacterized LOC105371424"
            },
            "metanode": "Gene"
        },
        {
            "id": 12684,
            "identifier": "GO:0034756",
            "identifier_type": "str",
            "name": "regulation of iron ion transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034756",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12685,
            "identifier": "482",
            "identifier_type": "int",
            "name": "ATP1B2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/482",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "ATPase, Na+/K+ transporting, beta 2 polypeptide"
            },
            "metanode": "Gene"
        },
        {
            "id": 12686,
            "identifier": "8989",
            "identifier_type": "int",
            "name": "TRPA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8989",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "transient receptor potential cation channel, subfamily A, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 12687,
            "identifier": "GO:0008144",
            "identifier_type": "str",
            "name": "drug binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008144",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 12688,
            "identifier": "137695",
            "identifier_type": "int",
            "name": "TMEM68",
            "properties": {
                "url": "http://identifiers.org/ncbigene/137695",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "transmembrane protein 68"
            },
            "metanode": "Gene"
        },
        {
            "id": 12689,
            "identifier": "GO:1904029",
            "identifier_type": "str",
            "name": "regulation of cyclin-dependent protein kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904029",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}