Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=12725

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12750",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12700",
    "results": [
        {
            "id": 12715,
            "identifier": "646174",
            "identifier_type": "int",
            "name": "C16orf90",
            "properties": {
                "url": "http://identifiers.org/ncbigene/646174",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "chromosome 16 open reading frame 90"
            },
            "metanode": "Gene"
        },
        {
            "id": 12716,
            "identifier": "DB00410",
            "identifier_type": "str",
            "name": "Mupirocin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00410",
                "inchi": "InChI=1S/C26H44O9/c1-16(13-23(30)33-11-9-7-5-4-6-8-10-22(28)29)12-20-25(32)24(31)19(15-34-20)14-21-26(35-21)17(2)18(3)27/h13,17-21,24-27,31-32H,4-12,14-15H2,1-3H3,(H,28,29)/b16-13+/t17-,18-,19-,20-,21-,24+,25-,26-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MINDHVHHQZYEEK-HBBNESRFSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12717,
            "identifier": "PC7_6867",
            "identifier_type": "str",
            "name": "Recycling of eIF2:GDP",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12718,
            "identifier": "10251",
            "identifier_type": "int",
            "name": "SPRY3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10251",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X|Y",
                "description": "sprouty homolog 3 (Drosophila)"
            },
            "metanode": "Gene"
        },
        {
            "id": 12719,
            "identifier": "C0344329",
            "identifier_type": "str",
            "name": "Collapse",
            "properties": {
                "url": "http://identifiers.org/umls/C0344329",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12720,
            "identifier": "GO:0019226",
            "identifier_type": "str",
            "name": "transmission of nerve impulse",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019226",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12721,
            "identifier": "C0232410",
            "identifier_type": "str",
            "name": "Hair growth increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0232410",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12722,
            "identifier": "105379861",
            "identifier_type": "int",
            "name": "LOC105379861",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105379861",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "neuropeptide Y receptor type 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 12723,
            "identifier": "N0000008054",
            "identifier_type": "str",
            "name": "Sulfonylurea Compounds",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000008054",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Chemical/Ingredient"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 12724,
            "identifier": "C0016867",
            "identifier_type": "str",
            "name": "Furunculosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0016867",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12725,
            "identifier": "DB00327",
            "identifier_type": "str",
            "name": "Hydromorphone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00327",
                "inchi": "InChI=1S/C17H19NO3/c1-18-7-6-17-10-3-5-13(20)16(17)21-15-12(19)4-2-9(14(15)17)8-11(10)18/h2,4,10-11,16,19H,3,5-8H2,1H3/t10-,11+,16-,17-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WVLOADHCBXTIJK-YNHQPCIGSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12726,
            "identifier": "GO:0060534",
            "identifier_type": "str",
            "name": "trachea cartilage development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060534",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12727,
            "identifier": "30815",
            "identifier_type": "int",
            "name": "ST6GALNAC6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/30815",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 12728,
            "identifier": "6538",
            "identifier_type": "int",
            "name": "SLC6A11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6538",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "solute carrier family 6 (neurotransmitter transporter), member 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 12729,
            "identifier": "10616",
            "identifier_type": "int",
            "name": "RBCK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10616",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "RanBP-type and C3HC4-type zinc finger containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 12730,
            "identifier": "GO:0001655",
            "identifier_type": "str",
            "name": "urogenital system development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001655",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12731,
            "identifier": "GO:0016119",
            "identifier_type": "str",
            "name": "carotene metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016119",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12732,
            "identifier": "GO:0006486",
            "identifier_type": "str",
            "name": "protein glycosylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006486",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12733,
            "identifier": "1370",
            "identifier_type": "int",
            "name": "CPN2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1370",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "carboxypeptidase N, polypeptide 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 12734,
            "identifier": "9877",
            "identifier_type": "int",
            "name": "ZC3H11A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9877",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "zinc finger CCCH-type containing 11A"
            },
            "metanode": "Gene"
        },
        {
            "id": 12735,
            "identifier": "PC7_4725",
            "identifier_type": "str",
            "name": "Inflammasomes",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12736,
            "identifier": "GO:0090241",
            "identifier_type": "str",
            "name": "negative regulation of histone H4 acetylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090241",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12737,
            "identifier": "390760",
            "identifier_type": "int",
            "name": "LOC390760",
            "properties": {
                "url": "http://identifiers.org/ncbigene/390760",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "protein phosphatase inhibitor 2-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 12738,
            "identifier": "79723",
            "identifier_type": "int",
            "name": "SUV39H2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79723",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "suppressor of variegation 3-9 homolog 2 (Drosophila)"
            },
            "metanode": "Gene"
        },
        {
            "id": 12739,
            "identifier": "GO:0017056",
            "identifier_type": "str",
            "name": "structural constituent of nuclear pore",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0017056",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}