Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=12750

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12775",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12725",
    "results": [
        {
            "id": 12740,
            "identifier": "101060351",
            "identifier_type": "int",
            "name": "TBC1D3K",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101060351",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "TBC1 domain family, member 3K"
            },
            "metanode": "Gene"
        },
        {
            "id": 12741,
            "identifier": "WP2034_r80016",
            "identifier_type": "str",
            "name": "Leptin signaling pathway",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2034_r80016",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12742,
            "identifier": "PC7_6875",
            "identifier_type": "str",
            "name": "Regulation of APC/C activators between G1/S and early anaphase",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12743,
            "identifier": "GO:0097369",
            "identifier_type": "str",
            "name": "sodium ion import",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097369",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12744,
            "identifier": "161497",
            "identifier_type": "int",
            "name": "STRC",
            "properties": {
                "url": "http://identifiers.org/ncbigene/161497",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "stereocilin"
            },
            "metanode": "Gene"
        },
        {
            "id": 12745,
            "identifier": "2068",
            "identifier_type": "int",
            "name": "ERCC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2068",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "excision repair cross-complementation group 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 12746,
            "identifier": "91137",
            "identifier_type": "int",
            "name": "SLC25A46",
            "properties": {
                "url": "http://identifiers.org/ncbigene/91137",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "solute carrier family 25, member 46"
            },
            "metanode": "Gene"
        },
        {
            "id": 12747,
            "identifier": "653602",
            "identifier_type": "int",
            "name": "LOC653602",
            "properties": {
                "url": "http://identifiers.org/ncbigene/653602",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "uncharacterized LOC653602"
            },
            "metanode": "Gene"
        },
        {
            "id": 12748,
            "identifier": "DB01558",
            "identifier_type": "str",
            "name": "Bromazepam",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01558",
                "inchi": "InChI=1S/C14H10BrN3O/c15-9-4-5-11-10(7-9)14(17-8-13(19)18-11)12-3-1-2-6-16-12/h1-7H,8H2,(H,18,19)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VMIYHDSEFNYJSL-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12749,
            "identifier": "4521",
            "identifier_type": "int",
            "name": "NUDT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4521",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "nudix (nucleoside diphosphate linked moiety X)-type motif 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 12750,
            "identifier": "DB01045",
            "identifier_type": "str",
            "name": "Rifampicin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01045",
                "inchi": "InChI=1S/C43H58N4O12/c1-21-12-11-13-22(2)42(55)45-33-28(20-44-47-17-15-46(9)16-18-47)37(52)30-31(38(33)53)36(51)26(6)40-32(30)41(54)43(8,59-40)57-19-14-29(56-10)23(3)39(58-27(7)48)25(5)35(50)24(4)34(21)49/h11-14,19-21,23-25,29,34-35,39,49-53H,15-18H2,1-10H3,(H,45,55)/b12-11+,19-14+,22-13-,44-20+/t21-,23+,24+,25+,29-,34-,35+,39+,43-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JQXXHWHPUNPDRT-WLSIYKJHSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12751,
            "identifier": "C0235770",
            "identifier_type": "str",
            "name": "Malignant ovarian cyst",
            "properties": {
                "url": "http://identifiers.org/umls/C0235770",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12752,
            "identifier": "6035",
            "identifier_type": "int",
            "name": "RNASE1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6035",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "ribonuclease, RNase A family, 1 (pancreatic)"
            },
            "metanode": "Gene"
        },
        {
            "id": 12753,
            "identifier": "PC7_6807",
            "identifier_type": "str",
            "name": "RNA Polymerase III Abortive And Retractive Initiation",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12754,
            "identifier": "WP183_r81161",
            "identifier_type": "str",
            "name": "Proteasome Degradation",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP183_r81161",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12755,
            "identifier": "C1328447",
            "identifier_type": "str",
            "name": "Brain stem syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C1328447",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12756,
            "identifier": "DB00134",
            "identifier_type": "str",
            "name": "L-Methionine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00134",
                "inchi": "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=FFEARJCKVFRZRR-BYPYZUCNSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12757,
            "identifier": "C1963789",
            "identifier_type": "str",
            "name": "Genital swelling",
            "properties": {
                "url": "http://identifiers.org/umls/C1963789",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12758,
            "identifier": "C1096256",
            "identifier_type": "str",
            "name": "Cryptococcal cutaneous infection",
            "properties": {
                "url": "http://identifiers.org/umls/C1096256",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12759,
            "identifier": "GO:0042734",
            "identifier_type": "str",
            "name": "presynaptic membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042734",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 12760,
            "identifier": "220965",
            "identifier_type": "int",
            "name": "FAM13C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/220965",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "family with sequence similarity 13, member C"
            },
            "metanode": "Gene"
        },
        {
            "id": 12761,
            "identifier": "C0001430",
            "identifier_type": "str",
            "name": "Adenoma benign",
            "properties": {
                "url": "http://identifiers.org/umls/C0001430",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12762,
            "identifier": "51",
            "identifier_type": "int",
            "name": "ACOX1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "acyl-CoA oxidase 1, palmitoyl"
            },
            "metanode": "Gene"
        },
        {
            "id": 12763,
            "identifier": "GO:0060526",
            "identifier_type": "str",
            "name": "prostate glandular acinus morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060526",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12764,
            "identifier": "DB00631",
            "identifier_type": "str",
            "name": "Clofarabine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00631",
                "inchi": "InChI=1S/C10H11ClFN5O3/c11-10-15-7(13)5-8(16-10)17(2-14-5)9-4(12)6(19)3(1-18)20-9/h2-4,6,9,18-19H,1H2,(H2,13,15,16)/t3-,4+,6-,9-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WDDPHFBMKLOVOX-AYQXTPAHSA-N"
            },
            "metanode": "Compound"
        }
    ]
}