Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=12800

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12825",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=12775",
    "results": [
        {
            "id": 12790,
            "identifier": "26279",
            "identifier_type": "int",
            "name": "PLA2G2D",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26279",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "phospholipase A2, group IID"
            },
            "metanode": "Gene"
        },
        {
            "id": 12791,
            "identifier": "55821",
            "identifier_type": "int",
            "name": "ALLC",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55821",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "allantoicase"
            },
            "metanode": "Gene"
        },
        {
            "id": 12792,
            "identifier": "PC7_3666",
            "identifier_type": "str",
            "name": "Endosomal Sorting Complex Required For Transport (ESCRT)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12793,
            "identifier": "C1565662",
            "identifier_type": "str",
            "name": "Acute renal insufficiency",
            "properties": {
                "url": "http://identifiers.org/umls/C1565662",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12794,
            "identifier": "GO:0061097",
            "identifier_type": "str",
            "name": "regulation of protein tyrosine kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061097",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12795,
            "identifier": "GO:0007416",
            "identifier_type": "str",
            "name": "synapse assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007416",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12796,
            "identifier": "GO:0051058",
            "identifier_type": "str",
            "name": "negative regulation of small GTPase mediated signal transduction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051058",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12797,
            "identifier": "631",
            "identifier_type": "int",
            "name": "BFSP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/631",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "beaded filament structural protein 1, filensin"
            },
            "metanode": "Gene"
        },
        {
            "id": 12798,
            "identifier": "9122",
            "identifier_type": "int",
            "name": "SLC16A4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9122",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "solute carrier family 16, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 12799,
            "identifier": "219902",
            "identifier_type": "int",
            "name": "TMEM136",
            "properties": {
                "url": "http://identifiers.org/ncbigene/219902",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "transmembrane protein 136"
            },
            "metanode": "Gene"
        },
        {
            "id": 12800,
            "identifier": "1409",
            "identifier_type": "int",
            "name": "CRYAA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1409",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "crystallin, alpha A"
            },
            "metanode": "Gene"
        },
        {
            "id": 12801,
            "identifier": "PC7_8074",
            "identifier_type": "str",
            "name": "TWIK related potassium channel (TREK)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 12802,
            "identifier": "2956",
            "identifier_type": "int",
            "name": "MSH6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2956",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "mutS homolog 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 12803,
            "identifier": "C0877517",
            "identifier_type": "str",
            "name": "Blood phosphorus decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C0877517",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 12804,
            "identifier": "DB00307",
            "identifier_type": "str",
            "name": "Bexarotene",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00307",
                "inchi": "InChI=1S/C24H28O2/c1-15-13-20-21(24(5,6)12-11-23(20,3)4)14-19(15)16(2)17-7-9-18(10-8-17)22(25)26/h7-10,13-14H,2,11-12H2,1,3-6H3,(H,25,26)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NAVMQTYZDKMPEU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12805,
            "identifier": "3920",
            "identifier_type": "int",
            "name": "LAMP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3920",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "lysosomal-associated membrane protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 12806,
            "identifier": "5409",
            "identifier_type": "int",
            "name": "PNMT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5409",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "phenylethanolamine N-methyltransferase"
            },
            "metanode": "Gene"
        },
        {
            "id": 12807,
            "identifier": "51351",
            "identifier_type": "int",
            "name": "ZNF117",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51351",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "zinc finger protein 117"
            },
            "metanode": "Gene"
        },
        {
            "id": 12808,
            "identifier": "23504",
            "identifier_type": "int",
            "name": "RIMBP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23504",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "RIMS binding protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 12809,
            "identifier": "GO:0071421",
            "identifier_type": "str",
            "name": "manganese ion transmembrane transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071421",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12810,
            "identifier": "DB00834",
            "identifier_type": "str",
            "name": "Mifepristone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00834",
                "inchi": "InChI=1S/C29H35NO2/c1-5-15-29(32)16-14-26-24-12-8-20-17-22(31)11-13-23(20)27(24)25(18-28(26,29)2)19-6-9-21(10-7-19)30(3)4/h6-7,9-10,17,24-26,32H,8,11-14,16,18H2,1-4H3/t24-,25+,26-,28-,29-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VKHAHZOOUSRJNA-GCNJZUOMSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 12811,
            "identifier": "GO:0005868",
            "identifier_type": "str",
            "name": "cytoplasmic dynein complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005868",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 12812,
            "identifier": "GO:0046629",
            "identifier_type": "str",
            "name": "gamma-delta T cell activation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046629",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12813,
            "identifier": "GO:0006734",
            "identifier_type": "str",
            "name": "NADH metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006734",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 12814,
            "identifier": "GO:0004977",
            "identifier_type": "str",
            "name": "melanocortin receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004977",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}