Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=1350
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1375", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1325", "results": [ { "id": 1348, "identifier": "GO:0030858", "identifier_type": "str", "name": "positive regulation of epithelial cell differentiation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030858", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1349, "identifier": "83894", "identifier_type": "int", "name": "TTC29", "properties": { "url": "http://identifiers.org/ncbigene/83894", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "tetratricopeptide repeat domain 29" }, "metanode": "Gene" }, { "id": 1350, "identifier": "81894", "identifier_type": "int", "name": "SLC25A28", "properties": { "url": "http://identifiers.org/ncbigene/81894", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "solute carrier family 25 (mitochondrial iron transporter), member 28" }, "metanode": "Gene" }, { "id": 1351, "identifier": "27032", "identifier_type": "int", "name": "ATP2C1", "properties": { "url": "http://identifiers.org/ncbigene/27032", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "ATPase, Ca++ transporting, type 2C, member 1" }, "metanode": "Gene" }, { "id": 1352, "identifier": "GO:0019213", "identifier_type": "str", "name": "deacetylase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0019213", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1353, "identifier": "C0032320", "identifier_type": "str", "name": "Pneumoperitoneum", "properties": { "url": "http://identifiers.org/umls/C0032320", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1354, "identifier": "GO:0015844", "identifier_type": "str", "name": "monoamine transport", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0015844", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1355, "identifier": "105372342", "identifier_type": "int", "name": "LOC105372342", "properties": { "url": "http://identifiers.org/ncbigene/105372342", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "uncharacterized LOC105372342" }, "metanode": "Gene" }, { "id": 1356, "identifier": "C0740434", "identifier_type": "str", "name": "Direct bilirubin increased", "properties": { "url": "http://identifiers.org/umls/C0740434", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1357, "identifier": "5480", "identifier_type": "int", "name": "PPIC", "properties": { "url": "http://identifiers.org/ncbigene/5480", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "peptidylprolyl isomerase C (cyclophilin C)" }, "metanode": "Gene" }, { "id": 1358, "identifier": "C0042075", "identifier_type": "str", "name": "Urinary tract disorder", "properties": { "url": "http://identifiers.org/umls/C0042075", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1359, "identifier": "140838", "identifier_type": "int", "name": "NANP", "properties": { "url": "http://identifiers.org/ncbigene/140838", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "20", "description": "N-acetylneuraminic acid phosphatase" }, "metanode": "Gene" }, { "id": 1360, "identifier": "GO:0006933", "identifier_type": "str", "name": "negative regulation of cell adhesion involved in substrate-bound cell migration", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0006933", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1361, "identifier": "GO:0061689", "identifier_type": "str", "name": "tricellular tight junction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0061689", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 1362, "identifier": "C0149504", "identifier_type": "str", "name": "Toxic encephalopathy", "properties": { "url": "http://identifiers.org/umls/C0149504", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1363, "identifier": "GO:0050901", "identifier_type": "str", "name": "leukocyte tethering or rolling", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0050901", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1364, "identifier": "23335", "identifier_type": "int", "name": "WDR7", "properties": { "url": "http://identifiers.org/ncbigene/23335", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "18", "description": "WD repeat domain 7" }, "metanode": "Gene" }, { "id": 1365, "identifier": "163154", "identifier_type": "int", "name": "PRR22", "properties": { "url": "http://identifiers.org/ncbigene/163154", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "proline rich 22" }, "metanode": "Gene" }, { "id": 1366, "identifier": "GO:0072659", "identifier_type": "str", "name": "protein localization to plasma membrane", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0072659", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1367, "identifier": "C0039614", "identifier_type": "str", "name": "Tetanus", "properties": { "url": "http://identifiers.org/umls/C0039614", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1368, "identifier": "92922", "identifier_type": "int", "name": "CCDC102A", "properties": { "url": "http://identifiers.org/ncbigene/92922", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "16", "description": "coiled-coil domain containing 102A" }, "metanode": "Gene" }, { "id": 1369, "identifier": "GO:2000552", "identifier_type": "str", "name": "negative regulation of T-helper 2 cell cytokine production", "properties": { "url": "http://purl.obolibrary.org/obo/GO_2000552", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1370, "identifier": "GO:0086091", "identifier_type": "str", "name": "regulation of heart rate by cardiac conduction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0086091", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1371, "identifier": "GO:0070373", "identifier_type": "str", "name": "negative regulation of ERK1 and ERK2 cascade", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070373", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1372, "identifier": "64963", "identifier_type": "int", "name": "MRPS11", "properties": { "url": "http://identifiers.org/ncbigene/64963", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "15", "description": "mitochondrial ribosomal protein S11" }, "metanode": "Gene" } ] }{ "count": 47031, "next": "