Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=1425
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1450", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1400", "results": [ { "id": 1423, "identifier": "GO:0072348", "identifier_type": "str", "name": "sulfur compound transport", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0072348", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1424, "identifier": "100287364", "identifier_type": "int", "name": "USP17L18", "properties": { "url": "http://identifiers.org/ncbigene/100287364", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "ubiquitin specific peptidase 17-like family member 18" }, "metanode": "Gene" }, { "id": 1425, "identifier": "GO:0030506", "identifier_type": "str", "name": "ankyrin binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030506", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1426, "identifier": "GO:0002544", "identifier_type": "str", "name": "chronic inflammatory response", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0002544", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1427, "identifier": "64208", "identifier_type": "int", "name": "POPDC3", "properties": { "url": "http://identifiers.org/ncbigene/64208", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "popeye domain containing 3" }, "metanode": "Gene" }, { "id": 1428, "identifier": "171019", "identifier_type": "int", "name": "ADAMTS19", "properties": { "url": "http://identifiers.org/ncbigene/171019", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "ADAM metallopeptidase with thrombospondin type 1 motif, 19" }, "metanode": "Gene" }, { "id": 1429, "identifier": "GO:0048387", "identifier_type": "str", "name": "negative regulation of retinoic acid receptor signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0048387", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 23284, "identifier": "PC7_3282", "identifier_type": "str", "name": "Disinhibition of SNARE formation", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 1430, "identifier": "78994", "identifier_type": "int", "name": "PRR14", "properties": { "url": "http://identifiers.org/ncbigene/78994", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "16", "description": "proline rich 14" }, "metanode": "Gene" }, { "id": 1431, "identifier": "GO:0072498", "identifier_type": "str", "name": "embryonic skeletal joint development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0072498", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1432, "identifier": "GO:0043455", "identifier_type": "str", "name": "regulation of secondary metabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0043455", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1433, "identifier": "GO:0030017", "identifier_type": "str", "name": "sarcomere", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030017", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 1434, "identifier": "C0235195", "identifier_type": "str", "name": "Sedation", "properties": { "url": "http://identifiers.org/umls/C0235195", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1435, "identifier": "GO:0035106", "identifier_type": "str", "name": "operant conditioning", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0035106", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1436, "identifier": "GO:0035112", "identifier_type": "str", "name": "genitalia morphogenesis", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0035112", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1437, "identifier": "GO:0015605", "identifier_type": "str", "name": "organophosphate ester transmembrane transporter activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0015605", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1438, "identifier": "GO:0002460", "identifier_type": "str", "name": "adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0002460", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1439, "identifier": "GO:0044531", "identifier_type": "str", "name": "modulation of programmed cell death in other organism", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0044531", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1440, "identifier": "GO:0004809", "identifier_type": "str", "name": "tRNA (guanine-N2-)-methyltransferase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0004809", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1441, "identifier": "N0000007780", "identifier_type": "str", "name": "Vinca Alkaloids", "properties": { "url": "http://purl.bioontology.org/ontology/NDFRT/N0000007780", "source": "FDA via DrugCentral", "license": "CC BY 4.0", "class_type": "Chemical/Ingredient" }, "metanode": "Pharmacologic Class" }, { "id": 1442, "identifier": "C0877305", "identifier_type": "str", "name": "Postoperative wound complication", "properties": { "url": "http://identifiers.org/umls/C0877305", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1443, "identifier": "2596", "identifier_type": "int", "name": "GAP43", "properties": { "url": "http://identifiers.org/ncbigene/2596", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "growth associated protein 43" }, "metanode": "Gene" }, { "id": 1444, "identifier": "GO:0033188", "identifier_type": "str", "name": "sphingomyelin synthase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0033188", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1445, "identifier": "100049579", "identifier_type": "int", "name": "OCTN3", "properties": { "url": "http://identifiers.org/ncbigene/100049579", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "organic cation transporter 3" }, "metanode": "Gene" }, { "id": 1446, "identifier": "79948", "identifier_type": "int", "name": "LPPR3", "properties": { "url": "http://identifiers.org/ncbigene/79948", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "lipid phosphate phosphatase-related protein type 3" }, "metanode": "Gene" } ] }{ "count": 47031, "next": "