Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=1450
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1475", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1425", "results": [ { "id": 1447, "identifier": "GO:0007016", "identifier_type": "str", "name": "cytoskeletal anchoring at plasma membrane", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0007016", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1448, "identifier": "5049", "identifier_type": "int", "name": "PAFAH1B2", "properties": { "url": "http://identifiers.org/ncbigene/5049", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)" }, "metanode": "Gene" }, { "id": 1449, "identifier": "GO:1904355", "identifier_type": "str", "name": "positive regulation of telomere capping", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1904355", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1450, "identifier": "GO:0033144", "identifier_type": "str", "name": "negative regulation of intracellular steroid hormone receptor signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0033144", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1451, "identifier": "C0424332", "identifier_type": "str", "name": "Breath holding attack", "properties": { "url": "http://identifiers.org/umls/C0424332", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1452, "identifier": "94134", "identifier_type": "int", "name": "ARHGAP12", "properties": { "url": "http://identifiers.org/ncbigene/94134", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "Rho GTPase activating protein 12" }, "metanode": "Gene" }, { "id": 1453, "identifier": "PC7_1523", "identifier_type": "str", "name": "Activation of BAD and translocation to mitochondria", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 1454, "identifier": "23144", "identifier_type": "int", "name": "ZC3H3", "properties": { "url": "http://identifiers.org/ncbigene/23144", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "zinc finger CCCH-type containing 3" }, "metanode": "Gene" }, { "id": 1455, "identifier": "GO:0009637", "identifier_type": "str", "name": "response to blue light", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0009637", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1456, "identifier": "GO:0001530", "identifier_type": "str", "name": "lipopolysaccharide binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0001530", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1457, "identifier": "PC7_4010", "identifier_type": "str", "name": "G2/M DNA replication checkpoint", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 1458, "identifier": "GO:0008441", "identifier_type": "str", "name": "3'(2'),5'-bisphosphate nucleotidase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0008441", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1459, "identifier": "GO:0031394", "identifier_type": "str", "name": "positive regulation of prostaglandin biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0031394", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1460, "identifier": "79574", "identifier_type": "int", "name": "EPS8L3", "properties": { "url": "http://identifiers.org/ncbigene/79574", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "EPS8-like 3" }, "metanode": "Gene" }, { "id": 1461, "identifier": "9342", "identifier_type": "int", "name": "SNAP29", "properties": { "url": "http://identifiers.org/ncbigene/9342", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "22", "description": "synaptosomal-associated protein, 29kDa" }, "metanode": "Gene" }, { "id": 1462, "identifier": "GO:0006382", "identifier_type": "str", "name": "adenosine to inosine editing", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0006382", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1463, "identifier": "340075", "identifier_type": "int", "name": "ARSI", "properties": { "url": "http://identifiers.org/ncbigene/340075", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "arylsulfatase family, member I" }, "metanode": "Gene" }, { "id": 1464, "identifier": "GO:1901611", "identifier_type": "str", "name": "phosphatidylglycerol binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_1901611", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 1465, "identifier": "27181", "identifier_type": "int", "name": "SIGLEC8", "properties": { "url": "http://identifiers.org/ncbigene/27181", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "sialic acid binding Ig-like lectin 8" }, "metanode": "Gene" }, { "id": 1466, "identifier": "C0742006", "identifier_type": "str", "name": "Catheter infection", "properties": { "url": "http://identifiers.org/umls/C0742006", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1467, "identifier": "57721", "identifier_type": "int", "name": "METTL14", "properties": { "url": "http://identifiers.org/ncbigene/57721", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "4", "description": "methyltransferase like 14" }, "metanode": "Gene" }, { "id": 1468, "identifier": "83482", "identifier_type": "int", "name": "SCRT1", "properties": { "url": "http://identifiers.org/ncbigene/83482", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "scratch family zinc finger 1" }, "metanode": "Gene" }, { "id": 1469, "identifier": "80256", "identifier_type": "int", "name": "FAM214B", "properties": { "url": "http://identifiers.org/ncbigene/80256", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "family with sequence similarity 214, member B" }, "metanode": "Gene" }, { "id": 1470, "identifier": "129401", "identifier_type": "int", "name": "NUP35", "properties": { "url": "http://identifiers.org/ncbigene/129401", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "nucleoporin 35kDa" }, "metanode": "Gene" }, { "id": 1471, "identifier": "C1318520", "identifier_type": "str", "name": "Vasculitis necrotising", "properties": { "url": "http://identifiers.org/umls/C1318520", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" } ] }{ "count": 47031, "next": "