Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=14550

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=14575",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=14525",
    "results": [
        {
            "id": 14541,
            "identifier": "DB01237",
            "identifier_type": "str",
            "name": "Bromodiphenhydramine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01237",
                "inchi": "InChI=1S/C17H20BrNO/c1-19(2)12-13-20-17(14-6-4-3-5-7-14)15-8-10-16(18)11-9-15/h3-11,17H,12-13H2,1-2H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NUNIWXHYABYXKF-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 14542,
            "identifier": "C0876994",
            "identifier_type": "str",
            "name": "Cardiotoxicity",
            "properties": {
                "url": "http://identifiers.org/umls/C0876994",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 14543,
            "identifier": "C1142015",
            "identifier_type": "str",
            "name": "Blood bilirubin abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C1142015",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 14544,
            "identifier": "GO:0072010",
            "identifier_type": "str",
            "name": "glomerular epithelium development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072010",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 14545,
            "identifier": "6683",
            "identifier_type": "int",
            "name": "SPAST",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6683",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "spastin"
            },
            "metanode": "Gene"
        },
        {
            "id": 14546,
            "identifier": "126308",
            "identifier_type": "int",
            "name": "MOB3A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/126308",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "MOB kinase activator 3A"
            },
            "metanode": "Gene"
        },
        {
            "id": 14547,
            "identifier": "C0009324",
            "identifier_type": "str",
            "name": "Colitis ulcerative",
            "properties": {
                "url": "http://identifiers.org/umls/C0009324",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 14582,
            "identifier": "79191",
            "identifier_type": "int",
            "name": "IRX3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79191",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "iroquois homeobox 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 14548,
            "identifier": "DB00290",
            "identifier_type": "str",
            "name": "Bleomycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00290",
                "inchi": "InChI=1S/C55H83N17O21S3/c1-20-33(69-46(72-44(20)58)25(12-31(57)76)64-13-24(56)45(59)82)50(86)71-35(41(26-14-61-19-65-26)91-54-43(39(80)37(78)29(15-73)90-54)92-53-40(81)42(93-55(60)88)38(79)30(16-74)89-53)51(87)66-22(3)36(77)21(2)47(83)70-34(23(4)75)49(85)63-10-8-32-67-28(18-94-32)52-68-27(17-95-52)48(84)62-9-7-11-96(5)6/h14,17-19,21-25,29-30,34-43,53-54,64,73-75,77-81H,7-13,15-16,56H2,1-6H3,(H13-,57,58,59,60,61,62,63,65,66,69,70,71,72,76,82,83,84,85,86,87,88)/p+1/t21-,22+,23+,24-,25-,29?,30?,34-,35-,36-,37?,38?,39?,40?,41-,42?,43?,53?,54?/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OYVAGSVQBOHSSS-WXFSZRTFSA-O"
            },
            "metanode": "Compound"
        },
        {
            "id": 14549,
            "identifier": "WP2276_r63194",
            "identifier_type": "str",
            "name": "Glial Cell Differentiation",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2276_r63194",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 14550,
            "identifier": "PC7_3061",
            "identifier_type": "str",
            "name": "Degradation of GLI2 by the proteasome",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 14551,
            "identifier": "10022",
            "identifier_type": "int",
            "name": "INSL5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10022",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "insulin-like 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 14552,
            "identifier": "GO:0072229",
            "identifier_type": "str",
            "name": "metanephric proximal convoluted tubule development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072229",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 14553,
            "identifier": "201176",
            "identifier_type": "int",
            "name": "ARHGAP27",
            "properties": {
                "url": "http://identifiers.org/ncbigene/201176",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "Rho GTPase activating protein 27"
            },
            "metanode": "Gene"
        },
        {
            "id": 14554,
            "identifier": "GO:0006565",
            "identifier_type": "str",
            "name": "L-serine catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006565",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 14555,
            "identifier": "PC7_5519",
            "identifier_type": "str",
            "name": "Mitochondrial transcription initiation",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 14556,
            "identifier": "3840",
            "identifier_type": "int",
            "name": "KPNA4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3840",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "karyopherin alpha 4 (importin alpha 3)"
            },
            "metanode": "Gene"
        },
        {
            "id": 14557,
            "identifier": "8379",
            "identifier_type": "int",
            "name": "MAD1L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8379",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "MAD1 mitotic arrest deficient-like 1 (yeast)"
            },
            "metanode": "Gene"
        },
        {
            "id": 14558,
            "identifier": "PC7_12080",
            "identifier_type": "str",
            "name": "mTORC1-mediated signalling",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 14559,
            "identifier": "C0242788",
            "identifier_type": "str",
            "name": "Breast neoplasm NOS male",
            "properties": {
                "url": "http://identifiers.org/umls/C0242788",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 14560,
            "identifier": "GO:0008109",
            "identifier_type": "str",
            "name": "N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008109",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 14561,
            "identifier": "GO:0019842",
            "identifier_type": "str",
            "name": "vitamin binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019842",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 14562,
            "identifier": "2213",
            "identifier_type": "int",
            "name": "FCGR2B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2213",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "Fc fragment of IgG, low affinity IIb, receptor (CD32)"
            },
            "metanode": "Gene"
        },
        {
            "id": 14563,
            "identifier": "10960",
            "identifier_type": "int",
            "name": "LMAN2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10960",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "lectin, mannose-binding 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 14564,
            "identifier": "GO:0003865",
            "identifier_type": "str",
            "name": "3-oxo-5-alpha-steroid 4-dehydrogenase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003865",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}