Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=15600

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=15625",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=15575",
    "results": [
        {
            "id": 15591,
            "identifier": "GO:0005250",
            "identifier_type": "str",
            "name": "A-type (transient outward) potassium channel activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005250",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 15592,
            "identifier": "284467",
            "identifier_type": "int",
            "name": "FAM19A3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/284467",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "family with sequence similarity 19 (chemokine (C-C motif)-like), member A3"
            },
            "metanode": "Gene"
        },
        {
            "id": 15593,
            "identifier": "1133",
            "identifier_type": "int",
            "name": "CHRM5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1133",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "cholinergic receptor, muscarinic 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 15594,
            "identifier": "51155",
            "identifier_type": "int",
            "name": "HN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51155",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "hematological and neurological expressed 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 15595,
            "identifier": "C0855791",
            "identifier_type": "str",
            "name": "Mean cell volume increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0855791",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15596,
            "identifier": "GO:0043512",
            "identifier_type": "str",
            "name": "inhibin A complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043512",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 15597,
            "identifier": "GO:0000056",
            "identifier_type": "str",
            "name": "ribosomal small subunit export from nucleus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000056",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15598,
            "identifier": "C0853225",
            "identifier_type": "str",
            "name": "International normalised ratio increased",
            "properties": {
                "url": "http://identifiers.org/umls/C0853225",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15599,
            "identifier": "3458",
            "identifier_type": "int",
            "name": "IFNG",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3458",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "interferon, gamma"
            },
            "metanode": "Gene"
        },
        {
            "id": 15600,
            "identifier": "5927",
            "identifier_type": "int",
            "name": "KDM5A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5927",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "lysine (K)-specific demethylase 5A"
            },
            "metanode": "Gene"
        },
        {
            "id": 15601,
            "identifier": "10578",
            "identifier_type": "int",
            "name": "GNLY",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10578",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "granulysin"
            },
            "metanode": "Gene"
        },
        {
            "id": 15602,
            "identifier": "GO:0043621",
            "identifier_type": "str",
            "name": "protein self-association",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043621",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 15603,
            "identifier": "GO:0033691",
            "identifier_type": "str",
            "name": "sialic acid binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033691",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 15604,
            "identifier": "GO:0045028",
            "identifier_type": "str",
            "name": "G-protein coupled purinergic nucleotide receptor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045028",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 15605,
            "identifier": "PC7_6517",
            "identifier_type": "str",
            "name": "Plexin-D1 Signaling",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 15606,
            "identifier": "GO:0035249",
            "identifier_type": "str",
            "name": "synaptic transmission, glutamatergic",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035249",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15607,
            "identifier": "4284",
            "identifier_type": "int",
            "name": "MIP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4284",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "major intrinsic protein of lens fiber"
            },
            "metanode": "Gene"
        },
        {
            "id": 15608,
            "identifier": "C1141948",
            "identifier_type": "str",
            "name": "Troponin increased",
            "properties": {
                "url": "http://identifiers.org/umls/C1141948",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15609,
            "identifier": "GO:0072234",
            "identifier_type": "str",
            "name": "metanephric nephron tubule development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072234",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15610,
            "identifier": "DB00362",
            "identifier_type": "str",
            "name": "Anidulafungin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00362",
                "inchi": "InChI=1S/C58H73N7O17/c1-5-6-7-24-82-40-22-18-35(19-23-40)33-10-8-32(9-11-33)34-12-14-37(15-13-34)51(74)59-41-26-43(70)54(77)63-56(79)47-48(71)29(2)27-65(47)58(81)45(31(4)67)61-55(78)46(50(73)49(72)36-16-20-38(68)21-17-36)62-53(76)42-25-39(69)28-64(42)57(80)44(30(3)66)60-52(41)75/h8-23,29-31,39,41-50,54,66-73,77H,5-7,24-28H2,1-4H3,(H,59,74)(H,60,75)(H,61,78)(H,62,76)(H,63,79)/t29-,30+,31+,39+,41-,42-,43+,44-,45-,46-,47-,48-,49-,50-,54+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JHVAMHSQVVQIOT-MFAJLEFUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 15611,
            "identifier": "6865",
            "identifier_type": "int",
            "name": "TACR2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6865",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "tachykinin receptor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 15612,
            "identifier": "56903",
            "identifier_type": "int",
            "name": "PAPOLB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56903",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "poly(A) polymerase beta (testis specific)"
            },
            "metanode": "Gene"
        },
        {
            "id": 15613,
            "identifier": "GO:0060448",
            "identifier_type": "str",
            "name": "dichotomous subdivision of terminal units involved in lung branching",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060448",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15614,
            "identifier": "C1096188",
            "identifier_type": "str",
            "name": "Puncture site reaction",
            "properties": {
                "url": "http://identifiers.org/umls/C1096188",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15615,
            "identifier": "GO:0009260",
            "identifier_type": "str",
            "name": "ribonucleotide biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009260",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}