Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=15875

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=15900",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=15850",
    "results": [
        {
            "id": 15865,
            "identifier": "DB00419",
            "identifier_type": "str",
            "name": "Miglustat",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00419",
                "inchi": "InChI=1S/C10H21NO4/c1-2-3-4-11-5-8(13)10(15)9(14)7(11)6-12/h7-10,12-15H,2-6H2,1H3/t7-,8+,9-,10-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UQRORFVVSGFNRO-UTINFBMNSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 15866,
            "identifier": "105373800",
            "identifier_type": "int",
            "name": "LOC105373800",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105373800",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "serine/arginine repetitive matrix protein 1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 15867,
            "identifier": "GO:2001241",
            "identifier_type": "str",
            "name": "positive regulation of extrinsic apoptotic signaling pathway in absence of ligand",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2001241",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15868,
            "identifier": "10383",
            "identifier_type": "int",
            "name": "TUBB4B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10383",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "tubulin, beta 4B class IVb"
            },
            "metanode": "Gene"
        },
        {
            "id": 15869,
            "identifier": "55850",
            "identifier_type": "int",
            "name": "USE1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55850",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "unconventional SNARE in the ER 1 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 15870,
            "identifier": "DB01396",
            "identifier_type": "str",
            "name": "Digitoxin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01396",
                "inchi": "InChI=1S/C41H64O13/c1-20-36(46)29(42)16-34(49-20)53-38-22(3)51-35(18-31(38)44)54-37-21(2)50-33(17-30(37)43)52-25-8-11-39(4)24(15-25)6-7-28-27(39)9-12-40(5)26(10-13-41(28,40)47)23-14-32(45)48-19-23/h14,20-22,24-31,33-38,42-44,46-47H,6-13,15-19H2,1-5H3/t20-,21-,22-,24-,25+,26-,27+,28-,29+,30+,31+,33+,34+,35+,36-,37-,38-,39+,40-,41+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WDJUZGPOPHTGOT-XUDUSOBPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 15871,
            "identifier": "C1096670",
            "identifier_type": "str",
            "name": "Antitussive therapy",
            "properties": {
                "url": "http://identifiers.org/umls/C1096670",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15872,
            "identifier": "105376141",
            "identifier_type": "int",
            "name": "LOC105376141",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105376141",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "uncharacterized LOC105376141"
            },
            "metanode": "Gene"
        },
        {
            "id": 15873,
            "identifier": "C2712122",
            "identifier_type": "str",
            "name": "Blood pressure normal",
            "properties": {
                "url": "http://identifiers.org/umls/C2712122",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15874,
            "identifier": "C0679403",
            "identifier_type": "str",
            "name": "Vascular stenosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0679403",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15875,
            "identifier": "9295",
            "identifier_type": "int",
            "name": "SRSF11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9295",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "serine/arginine-rich splicing factor 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 15876,
            "identifier": "UBERON:0002351",
            "identifier_type": "str",
            "name": "sinoatrial node",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002351",
                "bto_id": "BTO:0004358",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D012849"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 15877,
            "identifier": "C0036104",
            "identifier_type": "str",
            "name": "Salivation",
            "properties": {
                "url": "http://identifiers.org/umls/C0036104",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15878,
            "identifier": "105378594",
            "identifier_type": "int",
            "name": "LOC105378594",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105378594",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "nuclear speckle splicing regulatory protein 1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 15879,
            "identifier": "149699",
            "identifier_type": "int",
            "name": "GTSF1L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/149699",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "gametocyte specific factor 1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 15880,
            "identifier": "PC7_7264",
            "identifier_type": "str",
            "name": "SHC-related events",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 15881,
            "identifier": "GO:0060586",
            "identifier_type": "str",
            "name": "multicellular organismal iron ion homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060586",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15882,
            "identifier": "57674",
            "identifier_type": "int",
            "name": "RNF213",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57674",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "ring finger protein 213"
            },
            "metanode": "Gene"
        },
        {
            "id": 15883,
            "identifier": "GO:0000975",
            "identifier_type": "str",
            "name": "regulatory region DNA binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000975",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 15884,
            "identifier": "GO:0071336",
            "identifier_type": "str",
            "name": "regulation of hair follicle cell proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071336",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15885,
            "identifier": "GO:1990126",
            "identifier_type": "str",
            "name": "retrograde transport, endosome to plasma membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1990126",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 15886,
            "identifier": "C0857027",
            "identifier_type": "str",
            "name": "Feeling sick",
            "properties": {
                "url": "http://identifiers.org/umls/C0857027",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 15887,
            "identifier": "5582",
            "identifier_type": "int",
            "name": "PRKCG",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5582",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "protein kinase C, gamma"
            },
            "metanode": "Gene"
        },
        {
            "id": 15888,
            "identifier": "51380",
            "identifier_type": "int",
            "name": "CSAD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51380",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "cysteine sulfinic acid decarboxylase"
            },
            "metanode": "Gene"
        },
        {
            "id": 15889,
            "identifier": "C1142086",
            "identifier_type": "str",
            "name": "Vitamin E decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C1142086",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        }
    ]
}