Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=17525

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=17550",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=17500",
    "results": [
        {
            "id": 17515,
            "identifier": "GO:0007492",
            "identifier_type": "str",
            "name": "endoderm development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007492",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 17516,
            "identifier": "7159",
            "identifier_type": "int",
            "name": "TP53BP2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7159",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "tumor protein p53 binding protein 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 17517,
            "identifier": "146722",
            "identifier_type": "int",
            "name": "CD300LF",
            "properties": {
                "url": "http://identifiers.org/ncbigene/146722",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "CD300 molecule-like family member f"
            },
            "metanode": "Gene"
        },
        {
            "id": 17518,
            "identifier": "C1407280",
            "identifier_type": "str",
            "name": "Peripheral artery thrombosis",
            "properties": {
                "url": "http://identifiers.org/umls/C1407280",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 17519,
            "identifier": "C0004364",
            "identifier_type": "str",
            "name": "Autoimmune disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0004364",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 17520,
            "identifier": "PC7_7645",
            "identifier_type": "str",
            "name": "Sodium/Proton exchangers",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 17521,
            "identifier": "100287441",
            "identifier_type": "int",
            "name": "USP17L20",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100287441",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "ubiquitin specific peptidase 17-like family member 20"
            },
            "metanode": "Gene"
        },
        {
            "id": 17522,
            "identifier": "GO:0046552",
            "identifier_type": "str",
            "name": "photoreceptor cell fate commitment",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046552",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 17523,
            "identifier": "GO:0016639",
            "identifier_type": "str",
            "name": "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016639",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 17524,
            "identifier": "79087",
            "identifier_type": "int",
            "name": "ALG12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79087",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "ALG12, alpha-1,6-mannosyltransferase"
            },
            "metanode": "Gene"
        },
        {
            "id": 17525,
            "identifier": "105371162",
            "identifier_type": "int",
            "name": "LOC105371162",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105371162",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "uncharacterized LOC105371162"
            },
            "metanode": "Gene"
        },
        {
            "id": 17526,
            "identifier": "DB00765",
            "identifier_type": "str",
            "name": "Metyrosine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00765",
                "inchi": "InChI=1S/C10H13NO3/c1-10(11,9(13)14)6-7-2-4-8(12)5-3-7/h2-5,12H,6,11H2,1H3,(H,13,14)/t10-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NHTGHBARYWONDQ-JTQLQIEISA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 17527,
            "identifier": "PC7_7474",
            "identifier_type": "str",
            "name": "Signaling by NOTCH4",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 17528,
            "identifier": "220",
            "identifier_type": "int",
            "name": "ALDH1A3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/220",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "aldehyde dehydrogenase 1 family, member A3"
            },
            "metanode": "Gene"
        },
        {
            "id": 17529,
            "identifier": "8727",
            "identifier_type": "int",
            "name": "CTNNAL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8727",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "catenin (cadherin-associated protein), alpha-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 17530,
            "identifier": "100996335",
            "identifier_type": "int",
            "name": "LOC100996335",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100996335",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "putative uncharacterized protein LOC388882"
            },
            "metanode": "Gene"
        },
        {
            "id": 17531,
            "identifier": "389610",
            "identifier_type": "int",
            "name": "XKR5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/389610",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "XK, Kell blood group complex subunit-related family, member 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 17532,
            "identifier": "GO:1904672",
            "identifier_type": "str",
            "name": "regulation of somatic stem cell population maintenance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904672",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 17533,
            "identifier": "2673",
            "identifier_type": "int",
            "name": "GFPT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2673",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "glutamine--fructose-6-phosphate transaminase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 17534,
            "identifier": "11180",
            "identifier_type": "int",
            "name": "WDR6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11180",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "WD repeat domain 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 17535,
            "identifier": "GO:1903579",
            "identifier_type": "str",
            "name": "negative regulation of ATP metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903579",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 17536,
            "identifier": "DB02638",
            "identifier_type": "str",
            "name": "Terlipressin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB02638",
                "inchi": "InChI=1S/C52H74N16O15S2/c53-17-5-4-9-31(45(76)60-23-41(57)72)63-51(82)38-10-6-18-68(38)52(83)37-27-85-84-26-36(61-44(75)25-59-43(74)24-58-42(73)22-54)50(81)65-34(20-29-11-13-30(69)14-12-29)48(79)64-33(19-28-7-2-1-3-8-28)47(78)62-32(15-16-39(55)70)46(77)66-35(21-40(56)71)49(80)67-37/h1-3,7-8,11-14,31-38,69H,4-6,9-10,15-27,53-54H2,(H2,55,70)(H2,56,71)(H2,57,72)(H,58,73)(H,59,74)(H,60,76)(H,61,75)(H,62,78)(H,63,82)(H,64,79)(H,65,81)(H,66,77)(H,67,80)/t31-,32-,33-,34-,35-,36-,37-,38-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=BENFXAYNYRLAIU-QSVFAHTRSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 17537,
            "identifier": "51285",
            "identifier_type": "int",
            "name": "RASL12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51285",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "RAS-like, family 12"
            },
            "metanode": "Gene"
        },
        {
            "id": 17538,
            "identifier": "129807",
            "identifier_type": "int",
            "name": "NEU4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/129807",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "sialidase 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 17539,
            "identifier": "GO:0042092",
            "identifier_type": "str",
            "name": "type 2 immune response",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042092",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}