Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=1775
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1800", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=1750", "results": [ { "id": 1771, "identifier": "5189", "identifier_type": "int", "name": "PEX1", "properties": { "url": "http://identifiers.org/ncbigene/5189", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "7", "description": "peroxisomal biogenesis factor 1" }, "metanode": "Gene" }, { "id": 1772, "identifier": "GO:0045047", "identifier_type": "str", "name": "protein targeting to ER", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045047", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1773, "identifier": "GO:0030167", "identifier_type": "str", "name": "proteoglycan catabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030167", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1774, "identifier": "GO:0060838", "identifier_type": "str", "name": "lymphatic endothelial cell fate commitment", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0060838", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1775, "identifier": "GO:0010518", "identifier_type": "str", "name": "positive regulation of phospholipase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0010518", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1776, "identifier": "102724427", "identifier_type": "int", "name": "LOC102724427", "properties": { "url": "http://identifiers.org/ncbigene/102724427", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "uncharacterized LOC102724427" }, "metanode": "Gene" }, { "id": 1777, "identifier": "116844", "identifier_type": "int", "name": "LRG1", "properties": { "url": "http://identifiers.org/ncbigene/116844", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "leucine-rich alpha-2-glycoprotein 1" }, "metanode": "Gene" }, { "id": 1778, "identifier": "558", "identifier_type": "int", "name": "AXL", "properties": { "url": "http://identifiers.org/ncbigene/558", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "AXL receptor tyrosine kinase" }, "metanode": "Gene" }, { "id": 1779, "identifier": "59343", "identifier_type": "int", "name": "SENP2", "properties": { "url": "http://identifiers.org/ncbigene/59343", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "SUMO1/sentrin/SMT3 specific peptidase 2" }, "metanode": "Gene" }, { "id": 1780, "identifier": "C0235347", "identifier_type": "str", "name": "Black hairy tongue", "properties": { "url": "http://identifiers.org/umls/C0235347", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1781, "identifier": "GO:0043268", "identifier_type": "str", "name": "positive regulation of potassium ion transport", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0043268", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1782, "identifier": "GO:0019853", "identifier_type": "str", "name": "L-ascorbic acid biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0019853", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1783, "identifier": "57700", "identifier_type": "int", "name": "FAM160B1", "properties": { "url": "http://identifiers.org/ncbigene/57700", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "family with sequence similarity 160, member B1" }, "metanode": "Gene" }, { "id": 1784, "identifier": "GO:0071877", "identifier_type": "str", "name": "regulation of adrenergic receptor signaling pathway", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0071877", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1785, "identifier": "83461", "identifier_type": "int", "name": "CDCA3", "properties": { "url": "http://identifiers.org/ncbigene/83461", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "cell division cycle associated 3" }, "metanode": "Gene" }, { "id": 1786, "identifier": "728577", "identifier_type": "int", "name": "CNTNAP3B", "properties": { "url": "http://identifiers.org/ncbigene/728577", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "9", "description": "contactin associated protein-like 3B" }, "metanode": "Gene" }, { "id": 1787, "identifier": "C0858226", "identifier_type": "str", "name": "Plasma cholesterol increased", "properties": { "url": "http://identifiers.org/umls/C0858226", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1788, "identifier": "5592", "identifier_type": "int", "name": "PRKG1", "properties": { "url": "http://identifiers.org/ncbigene/5592", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "protein kinase, cGMP-dependent, type I" }, "metanode": "Gene" }, { "id": 1789, "identifier": "GO:0061484", "identifier_type": "str", "name": "hematopoietic stem cell homeostasis", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0061484", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1790, "identifier": "51534", "identifier_type": "int", "name": "VTA1", "properties": { "url": "http://identifiers.org/ncbigene/51534", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "vesicle (multivesicular body) trafficking 1" }, "metanode": "Gene" }, { "id": 1791, "identifier": "WP2261_r81197", "identifier_type": "str", "name": "Signaling Pathways in Glioblastoma", "properties": { "url": "http://www.wikipathways.org/instance/WP2261_r81197", "source": "WikiPathways", "license": "CC BY 3.0" }, "metanode": "Pathway" }, { "id": 1792, "identifier": "GO:0014012", "identifier_type": "str", "name": "peripheral nervous system axon regeneration", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0014012", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 1793, "identifier": "C0001621", "identifier_type": "str", "name": "Adrenal disorder", "properties": { "url": "http://identifiers.org/umls/C0001621", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 1794, "identifier": "UBERON:0001837", "identifier_type": "str", "name": "duct of salivary gland", "properties": { "url": "http://purl.obolibrary.org/obo/UBERON_0001837", "bto_id": "BTO:0005115", "source": "Uberon", "license": "CC BY 3.0", "mesh_id": "D018987" }, "metanode": "Anatomy" }, { "id": 1795, "identifier": "GO:0000305", "identifier_type": "str", "name": "response to oxygen radical", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0000305", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "