Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=18200

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=18225",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=18175",
    "results": [
        {
            "id": 18192,
            "identifier": "79465",
            "identifier_type": "int",
            "name": "ULBP3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79465",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "UL16 binding protein 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 18193,
            "identifier": "3039",
            "identifier_type": "int",
            "name": "HBA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3039",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "hemoglobin, alpha 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 18194,
            "identifier": "GO:0036006",
            "identifier_type": "str",
            "name": "cellular response to macrophage colony-stimulating factor stimulus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0036006",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18195,
            "identifier": "C0010278",
            "identifier_type": "str",
            "name": "Craniosynostosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0010278",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 18196,
            "identifier": "440498",
            "identifier_type": "int",
            "name": "HSBP1L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/440498",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "heat shock factor binding protein 1-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 18197,
            "identifier": "GO:1901407",
            "identifier_type": "str",
            "name": "regulation of phosphorylation of RNA polymerase II C-terminal domain",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901407",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18198,
            "identifier": "GO:0033135",
            "identifier_type": "str",
            "name": "regulation of peptidyl-serine phosphorylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033135",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18199,
            "identifier": "5294",
            "identifier_type": "int",
            "name": "PIK3CG",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5294",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma"
            },
            "metanode": "Gene"
        },
        {
            "id": 18200,
            "identifier": "23191",
            "identifier_type": "int",
            "name": "CYFIP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23191",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "cytoplasmic FMR1 interacting protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 18201,
            "identifier": "D020820",
            "identifier_type": "str",
            "name": "Dyskinesias",
            "properties": {
                "url": "http://identifiers.org/mesh/D020820",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 18202,
            "identifier": "3067",
            "identifier_type": "int",
            "name": "HDC",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3067",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "histidine decarboxylase"
            },
            "metanode": "Gene"
        },
        {
            "id": 18203,
            "identifier": "C0392390",
            "identifier_type": "str",
            "name": "Hepatitis B e antigen positive",
            "properties": {
                "url": "http://identifiers.org/umls/C0392390",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 18204,
            "identifier": "GO:0015986",
            "identifier_type": "str",
            "name": "ATP synthesis coupled proton transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015986",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18205,
            "identifier": "GO:2001027",
            "identifier_type": "str",
            "name": "negative regulation of endothelial cell chemotaxis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2001027",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18206,
            "identifier": "51334",
            "identifier_type": "int",
            "name": "PRR16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51334",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "proline rich 16"
            },
            "metanode": "Gene"
        },
        {
            "id": 18207,
            "identifier": "DB00877",
            "identifier_type": "str",
            "name": "Sirolimus",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00877",
                "inchi": "InChI=1S/C51H79NO13/c1-30-16-12-11-13-17-31(2)42(61-8)28-38-21-19-36(7)51(60,65-38)48(57)49(58)52-23-15-14-18-39(52)50(59)64-43(33(4)26-37-20-22-40(53)44(27-37)62-9)29-41(54)32(3)25-35(6)46(56)47(63-10)45(55)34(5)24-30/h11-13,16-17,25,30,32-34,36-40,42-44,46-47,53,56,60H,14-15,18-24,26-29H2,1-10H3/b13-11+,16-12+,31-17+,35-25+/t30-,32-,33+,34-,36-,37+,38+,39+,40-,42+,43+,44-,46-,47+,51-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=QFJCIRLUMZQUOT-KLHQEZAJSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 18208,
            "identifier": "90381",
            "identifier_type": "int",
            "name": "TICRR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/90381",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "TOPBP1-interacting checkpoint and replication regulator"
            },
            "metanode": "Gene"
        },
        {
            "id": 18209,
            "identifier": "GO:1903900",
            "identifier_type": "str",
            "name": "regulation of viral life cycle",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903900",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18210,
            "identifier": "23503",
            "identifier_type": "int",
            "name": "ZFYVE26",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23503",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "zinc finger, FYVE domain containing 26"
            },
            "metanode": "Gene"
        },
        {
            "id": 18211,
            "identifier": "N0000007961",
            "identifier_type": "str",
            "name": "Heparin, Low-Molecular-Weight",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000007961",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Chemical/Ingredient"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 18212,
            "identifier": "GO:0042554",
            "identifier_type": "str",
            "name": "superoxide anion generation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042554",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18213,
            "identifier": "84343",
            "identifier_type": "int",
            "name": "HPS3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84343",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "Hermansky-Pudlak syndrome 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 18214,
            "identifier": "GO:0010025",
            "identifier_type": "str",
            "name": "wax biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010025",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18215,
            "identifier": "GO:1904294",
            "identifier_type": "str",
            "name": "positive regulation of ERAD pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904294",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18216,
            "identifier": "6346",
            "identifier_type": "int",
            "name": "CCL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6346",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "chemokine (C-C motif) ligand 1"
            },
            "metanode": "Gene"
        }
    ]
}