Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=18675

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=18700",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=18650",
    "results": [
        {
            "id": 18667,
            "identifier": "GO:0005294",
            "identifier_type": "str",
            "name": "neutral L-amino acid secondary active transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005294",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 18668,
            "identifier": "25915",
            "identifier_type": "int",
            "name": "NDUFAF3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25915",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 18669,
            "identifier": "PC7_4006",
            "identifier_type": "str",
            "name": "G1/S-Specific Transcription",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 18670,
            "identifier": "GO:1900221",
            "identifier_type": "str",
            "name": "regulation of beta-amyloid clearance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1900221",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18671,
            "identifier": "GO:0031947",
            "identifier_type": "str",
            "name": "negative regulation of glucocorticoid biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031947",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18672,
            "identifier": "9797",
            "identifier_type": "int",
            "name": "TATDN2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9797",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "TatD DNase domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 18673,
            "identifier": "51184",
            "identifier_type": "int",
            "name": "GPN3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51184",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "GPN-loop GTPase 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 18674,
            "identifier": "GO:2000276",
            "identifier_type": "str",
            "name": "negative regulation of oxidative phosphorylation uncoupler activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000276",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18675,
            "identifier": "GO:0090576",
            "identifier_type": "str",
            "name": "RNA polymerase III transcription factor complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090576",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 18676,
            "identifier": "GO:0019439",
            "identifier_type": "str",
            "name": "aromatic compound catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019439",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18677,
            "identifier": "197",
            "identifier_type": "int",
            "name": "AHSG",
            "properties": {
                "url": "http://identifiers.org/ncbigene/197",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "alpha-2-HS-glycoprotein"
            },
            "metanode": "Gene"
        },
        {
            "id": 18678,
            "identifier": "GO:0060440",
            "identifier_type": "str",
            "name": "trachea formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060440",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18679,
            "identifier": "GO:1900920",
            "identifier_type": "str",
            "name": "regulation of L-glutamate import",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1900920",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18680,
            "identifier": "130749",
            "identifier_type": "int",
            "name": "CPO",
            "properties": {
                "url": "http://identifiers.org/ncbigene/130749",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "carboxypeptidase O"
            },
            "metanode": "Gene"
        },
        {
            "id": 18681,
            "identifier": "283742",
            "identifier_type": "int",
            "name": "FAM98B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/283742",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "family with sequence similarity 98, member B"
            },
            "metanode": "Gene"
        },
        {
            "id": 18682,
            "identifier": "10544",
            "identifier_type": "int",
            "name": "PROCR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10544",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "protein C receptor, endothelial"
            },
            "metanode": "Gene"
        },
        {
            "id": 18683,
            "identifier": "10623",
            "identifier_type": "int",
            "name": "POLR3C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10623",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "polymerase (RNA) III (DNA directed) polypeptide C (62kD)"
            },
            "metanode": "Gene"
        },
        {
            "id": 18684,
            "identifier": "5589",
            "identifier_type": "int",
            "name": "PRKCSH",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5589",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "protein kinase C substrate 80K-H"
            },
            "metanode": "Gene"
        },
        {
            "id": 18685,
            "identifier": "C0392196",
            "identifier_type": "str",
            "name": "Injection site urticaria",
            "properties": {
                "url": "http://identifiers.org/umls/C0392196",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 18686,
            "identifier": "GO:1902534",
            "identifier_type": "str",
            "name": "single-organism membrane invagination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1902534",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18687,
            "identifier": "PC7_4759",
            "identifier_type": "str",
            "name": "Integrin family cell surface interactions",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 18758,
            "identifier": "374899",
            "identifier_type": "int",
            "name": "ZNF829",
            "properties": {
                "url": "http://identifiers.org/ncbigene/374899",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 829"
            },
            "metanode": "Gene"
        },
        {
            "id": 18688,
            "identifier": "DB00996",
            "identifier_type": "str",
            "name": "Gabapentin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00996",
                "inchi": "InChI=1S/C9H17NO2/c10-7-9(6-8(11)12)4-2-1-3-5-9/h1-7,10H2,(H,11,12)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UGJMXCAKCUNAIE-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 18689,
            "identifier": "GO:0045445",
            "identifier_type": "str",
            "name": "myoblast differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045445",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 18690,
            "identifier": "DB01010",
            "identifier_type": "str",
            "name": "Edrophonium",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01010",
                "inchi": "InChI=1S/C10H15NO/c1-4-11(2,3)9-6-5-7-10(12)8-9/h5-8H,4H2,1-3H3/p+1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VWLHWLSRQJQWRG-UHFFFAOYSA-O"
            },
            "metanode": "Compound"
        }
    ]
}