Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=19525

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=19550",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=19500",
    "results": [
        {
            "id": 19517,
            "identifier": "79673",
            "identifier_type": "int",
            "name": "ZNF329",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79673",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 329"
            },
            "metanode": "Gene"
        },
        {
            "id": 19518,
            "identifier": "2967",
            "identifier_type": "int",
            "name": "GTF2H3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2967",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "general transcription factor IIH, polypeptide 3, 34kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 19519,
            "identifier": "GO:0019674",
            "identifier_type": "str",
            "name": "NAD metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019674",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19520,
            "identifier": "C0021141",
            "identifier_type": "str",
            "name": "Inappropriate antidiuretic hormone secretion",
            "properties": {
                "url": "http://identifiers.org/umls/C0021141",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 19521,
            "identifier": "59353",
            "identifier_type": "int",
            "name": "TMEM35",
            "properties": {
                "url": "http://identifiers.org/ncbigene/59353",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "transmembrane protein 35"
            },
            "metanode": "Gene"
        },
        {
            "id": 19522,
            "identifier": "GO:0006695",
            "identifier_type": "str",
            "name": "cholesterol biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006695",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19523,
            "identifier": "9569",
            "identifier_type": "int",
            "name": "GTF2IRD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9569",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "GTF2I repeat domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 19524,
            "identifier": "GO:0008168",
            "identifier_type": "str",
            "name": "methyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008168",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19525,
            "identifier": "GO:0001825",
            "identifier_type": "str",
            "name": "blastocyst formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001825",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19526,
            "identifier": "DB08816",
            "identifier_type": "str",
            "name": "Ticagrelor",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08816",
                "inchi": "InChI=1S/C23H28F2N6O4S/c1-2-7-36-23-27-21(26-15-9-12(15)11-3-4-13(24)14(25)8-11)18-22(28-23)31(30-29-18)16-10-17(35-6-5-32)20(34)19(16)33/h3-4,8,12,15-17,19-20,32-34H,2,5-7,9-10H2,1H3,(H,26,27,28)/t12-,15+,16+,17-,19-,20+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OEKWJQXRCDYSHL-FNOIDJSQSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 19527,
            "identifier": "GO:0038162",
            "identifier_type": "str",
            "name": "erythropoietin-mediated signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0038162",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19528,
            "identifier": "101059915",
            "identifier_type": "int",
            "name": "LOC101059915",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101059915",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "uncharacterized protein CXorf49-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 19529,
            "identifier": "GO:0016638",
            "identifier_type": "str",
            "name": "oxidoreductase activity, acting on the CH-NH2 group of donors",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016638",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19530,
            "identifier": "GO:0060319",
            "identifier_type": "str",
            "name": "primitive erythrocyte differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060319",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19531,
            "identifier": "GO:1903027",
            "identifier_type": "str",
            "name": "regulation of opsonization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903027",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19532,
            "identifier": "138805",
            "identifier_type": "int",
            "name": "OR13F1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/138805",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "olfactory receptor, family 13, subfamily F, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 19533,
            "identifier": "GO:0019065",
            "identifier_type": "str",
            "name": "receptor-mediated endocytosis of virus by host cell",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019065",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19534,
            "identifier": "283514",
            "identifier_type": "int",
            "name": "SIAH3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/283514",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "siah E3 ubiquitin protein ligase family member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 19535,
            "identifier": "PC7_3437",
            "identifier_type": "str",
            "name": "ERKs are inactivated",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 19536,
            "identifier": "GO:0010960",
            "identifier_type": "str",
            "name": "magnesium ion homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010960",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19537,
            "identifier": "DB00689",
            "identifier_type": "str",
            "name": "Cephaloglycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00689",
                "inchi": "InChI=1S/C18H19N3O6S/c1-9(22)27-7-11-8-28-17-13(16(24)21(17)14(11)18(25)26)20-15(23)12(19)10-5-3-2-4-6-10/h2-6,12-13,17H,7-8,19H2,1H3,(H,20,23)(H,25,26)/t12-,13-,17-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=FUBBGQLTSCSAON-PBFPGSCMSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 19538,
            "identifier": "GO:0004756",
            "identifier_type": "str",
            "name": "selenide, water dikinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004756",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19539,
            "identifier": "GO:0016462",
            "identifier_type": "str",
            "name": "pyrophosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016462",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19540,
            "identifier": "GO:0030865",
            "identifier_type": "str",
            "name": "cortical cytoskeleton organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030865",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19541,
            "identifier": "PC7_4162",
            "identifier_type": "str",
            "name": "Gluconeogenesis",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        }
    ]
}