Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=19825

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=19850",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=19800",
    "results": [
        {
            "id": 19814,
            "identifier": "105371419",
            "identifier_type": "int",
            "name": "LOC105371419",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105371419",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "uncharacterized LOC105371419"
            },
            "metanode": "Gene"
        },
        {
            "id": 19815,
            "identifier": "GO:0003868",
            "identifier_type": "str",
            "name": "4-hydroxyphenylpyruvate dioxygenase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003868",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19816,
            "identifier": "477",
            "identifier_type": "int",
            "name": "ATP1A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/477",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ATPase, Na+/K+ transporting, alpha 2 polypeptide"
            },
            "metanode": "Gene"
        },
        {
            "id": 19817,
            "identifier": "8968",
            "identifier_type": "int",
            "name": "HIST1H3F",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8968",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "histone cluster 1, H3f"
            },
            "metanode": "Gene"
        },
        {
            "id": 19818,
            "identifier": "GO:0043237",
            "identifier_type": "str",
            "name": "laminin-1 binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043237",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19819,
            "identifier": "81669",
            "identifier_type": "int",
            "name": "CCNL2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/81669",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "cyclin L2"
            },
            "metanode": "Gene"
        },
        {
            "id": 19820,
            "identifier": "D007806",
            "identifier_type": "str",
            "name": "Language Disorders",
            "properties": {
                "url": "http://identifiers.org/mesh/D007806",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 19821,
            "identifier": "27079",
            "identifier_type": "int",
            "name": "RPUSD2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/27079",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "RNA pseudouridylate synthase domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 19822,
            "identifier": "GO:0000836",
            "identifier_type": "str",
            "name": "Hrd1p ubiquitin ligase complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000836",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 19823,
            "identifier": "GO:2000027",
            "identifier_type": "str",
            "name": "regulation of organ morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000027",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19824,
            "identifier": "GO:0030041",
            "identifier_type": "str",
            "name": "actin filament polymerization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030041",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19825,
            "identifier": "105372373",
            "identifier_type": "int",
            "name": "LOC105372373",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105372373",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 772"
            },
            "metanode": "Gene"
        },
        {
            "id": 19826,
            "identifier": "GO:0060972",
            "identifier_type": "str",
            "name": "left/right pattern formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060972",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19827,
            "identifier": "5271",
            "identifier_type": "int",
            "name": "SERPINB8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5271",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "serpin peptidase inhibitor, clade B (ovalbumin), member 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 19828,
            "identifier": "GO:0033484",
            "identifier_type": "str",
            "name": "nitric oxide homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033484",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20257,
            "identifier": "PC7_5881",
            "identifier_type": "str",
            "name": "Nephrin interactions",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 19830,
            "identifier": "23366",
            "identifier_type": "int",
            "name": "KIAA0895",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23366",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "KIAA0895"
            },
            "metanode": "Gene"
        },
        {
            "id": 19831,
            "identifier": "GO:0016601",
            "identifier_type": "str",
            "name": "Rac protein signal transduction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016601",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19832,
            "identifier": "84206",
            "identifier_type": "int",
            "name": "MEX3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84206",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "mex-3 RNA binding family member B"
            },
            "metanode": "Gene"
        },
        {
            "id": 19833,
            "identifier": "GO:0033030",
            "identifier_type": "str",
            "name": "negative regulation of neutrophil apoptotic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033030",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 19834,
            "identifier": "GO:0043531",
            "identifier_type": "str",
            "name": "ADP binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043531",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 19835,
            "identifier": "6209",
            "identifier_type": "int",
            "name": "RPS15",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6209",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "ribosomal protein S15"
            },
            "metanode": "Gene"
        },
        {
            "id": 19836,
            "identifier": "DB00602",
            "identifier_type": "str",
            "name": "Ivermectin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00602",
                "inchi": "InChI=1S/C48H74O14.C47H72O14/c1-11-25(2)43-28(5)17-18-47(62-43)23-34-20-33(61-47)16-15-27(4)42(26(3)13-12-14-32-24-55-45-40(49)29(6)19-35(46(51)58-34)48(32,45)52)59-39-22-37(54-10)44(31(8)57-39)60-38-21-36(53-9)41(50)30(7)56-38;1-24(2)41-27(5)16-17-46(61-41)22-33-19-32(60-46)15-14-26(4)42(25(3)12-11-13-31-23-54-44-39(48)28(6)18-34(45(50)57-33)47(31,44)51)58-38-21-36(53-10)43(30(8)56-38)59-37-20-35(52-9)40(49)29(7)55-37/h12-15,19,25-26,28,30-31,33-45,49-50,52H,11,16-18,20-24H2,1-10H3;11-14,18,24-25,27,29-30,32-44,48-49,51H,15-17,19-23H2,1-10H3/b13-12+,27-15+,32-14+;12-11+,26-14+,31-13+/t25-,26+,28+,30+,31+,33-,34+,35+,36+,37+,38+,39+,40-,41+,42+,43-,44+,45-,47-,48-;25-,27-,29-,30-,32+,33-,34-,35-,36-,37-,38-,39+,40-,41+,42-,43-,44+,46+,47+/m10/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SPBDXSGPUHCETR-CVSKBELMSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 19837,
            "identifier": "64866",
            "identifier_type": "int",
            "name": "CDCP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64866",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "CUB domain containing protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 19838,
            "identifier": "79652",
            "identifier_type": "int",
            "name": "TMEM204",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79652",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "transmembrane protein 204"
            },
            "metanode": "Gene"
        }
    ]
}