Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=20200

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20225",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20175",
    "results": [
        {
            "id": 20189,
            "identifier": "GO:1903690",
            "identifier_type": "str",
            "name": "negative regulation of wound healing, spreading of epidermal cells",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903690",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20190,
            "identifier": "GO:0033083",
            "identifier_type": "str",
            "name": "regulation of immature T cell proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033083",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20191,
            "identifier": "83795",
            "identifier_type": "int",
            "name": "KCNK16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/83795",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "potassium channel, two pore domain subfamily K, member 16"
            },
            "metanode": "Gene"
        },
        {
            "id": 20192,
            "identifier": "GO:0001649",
            "identifier_type": "str",
            "name": "osteoblast differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001649",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20193,
            "identifier": "554235",
            "identifier_type": "int",
            "name": "ASPDH",
            "properties": {
                "url": "http://identifiers.org/ncbigene/554235",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "aspartate dehydrogenase domain containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 20194,
            "identifier": "5686",
            "identifier_type": "int",
            "name": "PSMA5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5686",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "proteasome (prosome, macropain) subunit, alpha type, 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 20195,
            "identifier": "GO:0016772",
            "identifier_type": "str",
            "name": "transferase activity, transferring phosphorus-containing groups",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016772",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 20196,
            "identifier": "GO:0034711",
            "identifier_type": "str",
            "name": "inhibin binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034711",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 20197,
            "identifier": "4171",
            "identifier_type": "int",
            "name": "MCM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4171",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "minichromosome maintenance complex component 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 20198,
            "identifier": "54065",
            "identifier_type": "int",
            "name": "SMIM11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54065",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "small integral membrane protein 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 20199,
            "identifier": "GO:0030010",
            "identifier_type": "str",
            "name": "establishment of cell polarity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030010",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20200,
            "identifier": "GO:0048320",
            "identifier_type": "str",
            "name": "axial mesoderm formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048320",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20201,
            "identifier": "6624",
            "identifier_type": "int",
            "name": "FSCN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6624",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "fascin actin-bundling protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20202,
            "identifier": "9266",
            "identifier_type": "int",
            "name": "CYTH2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9266",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "cytohesin 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 20203,
            "identifier": "GO:0008143",
            "identifier_type": "str",
            "name": "poly(A) binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008143",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 20204,
            "identifier": "1200",
            "identifier_type": "int",
            "name": "TPP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1200",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "tripeptidyl peptidase I"
            },
            "metanode": "Gene"
        },
        {
            "id": 20205,
            "identifier": "9963",
            "identifier_type": "int",
            "name": "SLC23A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9963",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "solute carrier family 23 (ascorbic acid transporter), member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20206,
            "identifier": "23310",
            "identifier_type": "int",
            "name": "NCAPD3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23310",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "non-SMC condensin II complex, subunit D3"
            },
            "metanode": "Gene"
        },
        {
            "id": 20207,
            "identifier": "150383",
            "identifier_type": "int",
            "name": "CDPF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/150383",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "cysteine-rich, DPF motif domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20208,
            "identifier": "3797",
            "identifier_type": "int",
            "name": "KIF3C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3797",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "kinesin family member 3C"
            },
            "metanode": "Gene"
        },
        {
            "id": 20209,
            "identifier": "8192",
            "identifier_type": "int",
            "name": "CLPP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8192",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "caseinolytic mitochondrial matrix peptidase proteolytic subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 20210,
            "identifier": "C0948484",
            "identifier_type": "str",
            "name": "Anal discomfort",
            "properties": {
                "url": "http://identifiers.org/umls/C0948484",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 20211,
            "identifier": "DB00905",
            "identifier_type": "str",
            "name": "Bimatoprost",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00905",
                "inchi": "InChI=1S/C25H37NO4/c1-2-26-25(30)13-9-4-3-8-12-21-22(24(29)18-23(21)28)17-16-20(27)15-14-19-10-6-5-7-11-19/h3,5-8,10-11,16-17,20-24,27-29H,2,4,9,12-15,18H2,1H3,(H,26,30)/b8-3-,17-16+/t20-,21+,22+,23-,24+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=AQOKCDNYWBIDND-FTOWTWDKSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20212,
            "identifier": "GO:2000324",
            "identifier_type": "str",
            "name": "positive regulation of glucocorticoid receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000324",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20213,
            "identifier": "10661",
            "identifier_type": "int",
            "name": "KLF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10661",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "Kruppel-like factor 1 (erythroid)"
            },
            "metanode": "Gene"
        }
    ]
}