Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=20400

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20425",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20375",
    "results": [
        {
            "id": 20389,
            "identifier": "29777",
            "identifier_type": "int",
            "name": "ABT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29777",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "activator of basal transcription 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20390,
            "identifier": "5516",
            "identifier_type": "int",
            "name": "PPP2CB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5516",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "protein phosphatase 2, catalytic subunit, beta isozyme"
            },
            "metanode": "Gene"
        },
        {
            "id": 20391,
            "identifier": "GO:1902337",
            "identifier_type": "str",
            "name": "regulation of apoptotic process involved in morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1902337",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20392,
            "identifier": "GO:0032439",
            "identifier_type": "str",
            "name": "endosome localization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032439",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20393,
            "identifier": "23483",
            "identifier_type": "int",
            "name": "TGDS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23483",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "TDP-glucose 4,6-dehydratase"
            },
            "metanode": "Gene"
        },
        {
            "id": 20394,
            "identifier": "84451",
            "identifier_type": "int",
            "name": "KIAA1804",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84451",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "mixed lineage kinase 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 20395,
            "identifier": "C0149516",
            "identifier_type": "str",
            "name": "Chronic sinusitis",
            "properties": {
                "url": "http://identifiers.org/umls/C0149516",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 20396,
            "identifier": "5935",
            "identifier_type": "int",
            "name": "RBM3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5935",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "RNA binding motif (RNP1, RRM) protein 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 20397,
            "identifier": "105374314",
            "identifier_type": "int",
            "name": "LOC105374314",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105374314",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "uncharacterized LOC105374314"
            },
            "metanode": "Gene"
        },
        {
            "id": 20398,
            "identifier": "GO:0001977",
            "identifier_type": "str",
            "name": "renal system process involved in regulation of blood volume",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001977",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20399,
            "identifier": "GO:1903224",
            "identifier_type": "str",
            "name": "regulation of endodermal cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903224",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20400,
            "identifier": "6470",
            "identifier_type": "int",
            "name": "SHMT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6470",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "serine hydroxymethyltransferase 1 (soluble)"
            },
            "metanode": "Gene"
        },
        {
            "id": 20402,
            "identifier": "GO:0006722",
            "identifier_type": "str",
            "name": "triterpenoid metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006722",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20403,
            "identifier": "N0000167510",
            "identifier_type": "str",
            "name": "Estrogens, Conjugated (USP)",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000167510",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Chemical/Ingredient"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 20404,
            "identifier": "GO:1901621",
            "identifier_type": "str",
            "name": "negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901621",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20405,
            "identifier": "1046",
            "identifier_type": "int",
            "name": "CDX4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1046",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "caudal type homeobox 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 20406,
            "identifier": "9793",
            "identifier_type": "int",
            "name": "CKAP5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9793",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "cytoskeleton associated protein 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 20407,
            "identifier": "51196",
            "identifier_type": "int",
            "name": "PLCE1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51196",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "phospholipase C, epsilon 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20408,
            "identifier": "DB00425",
            "identifier_type": "str",
            "name": "Zolpidem",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00425",
                "inchi": "InChI=1S/C19H21N3O/c1-13-5-8-15(9-6-13)19-16(11-18(23)21(3)4)22-12-14(2)7-10-17(22)20-19/h5-10,12H,11H2,1-4H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZAFYATHCZYHLPB-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20409,
            "identifier": "399949",
            "identifier_type": "int",
            "name": "C11orf88",
            "properties": {
                "url": "http://identifiers.org/ncbigene/399949",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "chromosome 11 open reading frame 88"
            },
            "metanode": "Gene"
        },
        {
            "id": 20410,
            "identifier": "GO:0016939",
            "identifier_type": "str",
            "name": "kinesin II complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016939",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 20411,
            "identifier": "390436",
            "identifier_type": "int",
            "name": "OR4K17",
            "properties": {
                "url": "http://identifiers.org/ncbigene/390436",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "olfactory receptor, family 4, subfamily K, member 17"
            },
            "metanode": "Gene"
        },
        {
            "id": 20412,
            "identifier": "DB01411",
            "identifier_type": "str",
            "name": "Pranlukast",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01411",
                "inchi": "InChI=1S/C27H23N5O4/c33-23-17-25(26-29-31-32-30-26)36-24-16-20(11-14-22(23)24)28-27(34)19-9-12-21(13-10-19)35-15-5-4-8-18-6-2-1-3-7-18/h1-3,6-7,9-14,16-17H,4-5,8,15H2,(H,28,34)(H,29,30,31,32)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UAJUXJSXCLUTNU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20413,
            "identifier": "80851",
            "identifier_type": "int",
            "name": "SH3BP5L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80851",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "SH3-binding domain protein 5-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 20414,
            "identifier": "GO:1903874",
            "identifier_type": "str",
            "name": "ferrous iron transmembrane transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903874",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}