Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=20650

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20675",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20625",
    "results": [
        {
            "id": 20641,
            "identifier": "1892",
            "identifier_type": "int",
            "name": "ECHS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1892",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "enoyl CoA hydratase, short chain, 1, mitochondrial"
            },
            "metanode": "Gene"
        },
        {
            "id": 20642,
            "identifier": "GO:0002091",
            "identifier_type": "str",
            "name": "negative regulation of receptor internalization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002091",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20643,
            "identifier": "N0000182143",
            "identifier_type": "str",
            "name": "P2Y12 Receptor Antagonists",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000182143",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 20644,
            "identifier": "93953",
            "identifier_type": "int",
            "name": "ACRC",
            "properties": {
                "url": "http://identifiers.org/ncbigene/93953",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "acidic repeat containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 20645,
            "identifier": "DB00520",
            "identifier_type": "str",
            "name": "Caspofungin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00520",
                "inchi": "InChI=1S/C52H88N10O15/c1-5-28(2)24-29(3)12-10-8-6-7-9-11-13-39(69)56-34-26-38(68)46(55-22-21-54)60-50(75)43-37(67)19-23-61(43)52(77)41(36(66)18-20-53)58-49(74)42(45(71)44(70)31-14-16-32(64)17-15-31)59-48(73)35-25-33(65)27-62(35)51(76)40(30(4)63)57-47(34)72/h14-17,28-30,33-38,40-46,55,63-68,70-71H,5-13,18-27,53-54H2,1-4H3,(H,56,69)(H,57,72)(H,58,74)(H,59,73)(H,60,75)/t28?,29?,30-,33-,34+,35+,36-,37+,38-,40+,41+,42+,43+,44+,45+,46+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JYIKNQVWKBUSNH-OGZDCFRISA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20646,
            "identifier": "649330",
            "identifier_type": "int",
            "name": "HNRNPCL3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/649330",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "heterogeneous nuclear ribonucleoprotein C-like 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 20647,
            "identifier": "PC7_4530",
            "identifier_type": "str",
            "name": "Hydrolysis of LPC",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 20648,
            "identifier": "GO:0032461",
            "identifier_type": "str",
            "name": "positive regulation of protein oligomerization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032461",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20649,
            "identifier": "249",
            "identifier_type": "int",
            "name": "ALPL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/249",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "alkaline phosphatase, liver/bone/kidney"
            },
            "metanode": "Gene"
        },
        {
            "id": 20650,
            "identifier": "8756",
            "identifier_type": "int",
            "name": "ADAM7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8756",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "ADAM metallopeptidase domain 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 20651,
            "identifier": "128338",
            "identifier_type": "int",
            "name": "DRAM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/128338",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "DNA-damage regulated autophagy modulator 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 20652,
            "identifier": "C0549430",
            "identifier_type": "str",
            "name": "Procedural site reaction",
            "properties": {
                "url": "http://identifiers.org/umls/C0549430",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 20653,
            "identifier": "PC7_5512",
            "identifier_type": "str",
            "name": "Mitochondrial ABC transporters",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 20654,
            "identifier": "GO:0045737",
            "identifier_type": "str",
            "name": "positive regulation of cyclin-dependent protein serine/threonine kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045737",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20655,
            "identifier": "GO:0048103",
            "identifier_type": "str",
            "name": "somatic stem cell division",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048103",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20656,
            "identifier": "C0021092",
            "identifier_type": "str",
            "name": "Cerumen impaction",
            "properties": {
                "url": "http://identifiers.org/umls/C0021092",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 20657,
            "identifier": "2590",
            "identifier_type": "int",
            "name": "GALNT2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2590",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "polypeptide N-acetylgalactosaminyltransferase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 20658,
            "identifier": "11337",
            "identifier_type": "int",
            "name": "GABARAP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11337",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "GABA(A) receptor-associated protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 20659,
            "identifier": "22979",
            "identifier_type": "int",
            "name": "EFR3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22979",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "EFR3 homolog B (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 20660,
            "identifier": "WP2491_r73891",
            "identifier_type": "str",
            "name": "Diclofenac Metabolic Pathway",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2491_r73891",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 20661,
            "identifier": "55065",
            "identifier_type": "int",
            "name": "SLC52A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55065",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "solute carrier family 52 (riboflavin transporter), member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20662,
            "identifier": "GO:0006364",
            "identifier_type": "str",
            "name": "rRNA processing",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006364",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20663,
            "identifier": "C0020565",
            "identifier_type": "str",
            "name": "Hypertrophy of breast",
            "properties": {
                "url": "http://identifiers.org/umls/C0020565",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 20664,
            "identifier": "GO:0080122",
            "identifier_type": "str",
            "name": "AMP transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0080122",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 20665,
            "identifier": "7624",
            "identifier_type": "int",
            "name": "ZNF73",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7624",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "zinc finger protein 73"
            },
            "metanode": "Gene"
        }
    ]
}