Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=20950

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20975",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=20925",
    "results": [
        {
            "id": 20942,
            "identifier": "57189",
            "identifier_type": "int",
            "name": "KIAA1147",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57189",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "KIAA1147"
            },
            "metanode": "Gene"
        },
        {
            "id": 20943,
            "identifier": "DOID:1964",
            "identifier_type": "str",
            "name": "fallopian tube cancer",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/DOID_1964",
                "source": "Disease Ontology",
                "license": "CC BY 3.0"
            },
            "metanode": "Disease"
        },
        {
            "id": 20944,
            "identifier": "GO:0072525",
            "identifier_type": "str",
            "name": "pyridine-containing compound biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072525",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20945,
            "identifier": "GO:0009611",
            "identifier_type": "str",
            "name": "response to wounding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009611",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20946,
            "identifier": "126520",
            "identifier_type": "int",
            "name": "PLK5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/126520",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "polo-like kinase 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 20947,
            "identifier": "UBERON:0001225",
            "identifier_type": "str",
            "name": "cortex of kidney",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001225",
                "bto_id": "BTO:0001166",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D007672"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 20948,
            "identifier": "25876",
            "identifier_type": "int",
            "name": "SPEF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25876",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "sperm flagellar 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20949,
            "identifier": "1871",
            "identifier_type": "int",
            "name": "E2F3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1871",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "E2F transcription factor 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 20950,
            "identifier": "DB01020",
            "identifier_type": "str",
            "name": "Isosorbide Mononitrate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01020",
                "inchi": "InChI=1S/C6H9NO6/c8-3-1-11-6-4(13-7(9)10)2-12-5(3)6/h3-6,8H,1-2H2/t3-,4+,5+,6+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YWXYYJSYQOXTPL-SLPGGIOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20951,
            "identifier": "GO:0000799",
            "identifier_type": "str",
            "name": "nuclear condensin complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000799",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 20952,
            "identifier": "79095",
            "identifier_type": "int",
            "name": "C9orf16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79095",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "chromosome 9 open reading frame 16"
            },
            "metanode": "Gene"
        },
        {
            "id": 20953,
            "identifier": "GO:0051593",
            "identifier_type": "str",
            "name": "response to folic acid",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051593",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20954,
            "identifier": "PC7_6177",
            "identifier_type": "str",
            "name": "PLC beta mediated events",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 20955,
            "identifier": "DB00714",
            "identifier_type": "str",
            "name": "Apomorphine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00714",
                "inchi": "InChI=1S/C17H17NO2/c1-18-8-7-10-3-2-4-12-15(10)13(18)9-11-5-6-14(19)17(20)16(11)12/h2-6,13,19-20H,7-9H2,1H3/t13-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VMWNQDUVQKEIOC-CYBMUJFWSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20956,
            "identifier": "GO:0050701",
            "identifier_type": "str",
            "name": "interleukin-1 secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050701",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20957,
            "identifier": "GO:0045273",
            "identifier_type": "str",
            "name": "respiratory chain complex II",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045273",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 20958,
            "identifier": "DB00438",
            "identifier_type": "str",
            "name": "Ceftazidime",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00438",
                "inchi": "InChI=1S/C22H22N6O7S2/c1-22(2,20(33)34)35-26-13(12-10-37-21(23)24-12)16(29)25-14-17(30)28-15(19(31)32)11(9-36-18(14)28)8-27-6-4-3-5-7-27/h3-7,10,14,18H,8-9H2,1-2H3,(H4-,23,24,25,29,31,32,33,34)/b26-13-/t14-,18-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ORFOPKXBNMVMKC-DWVKKRMSSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 20959,
            "identifier": "GO:0071901",
            "identifier_type": "str",
            "name": "negative regulation of protein serine/threonine kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071901",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20960,
            "identifier": "284307",
            "identifier_type": "int",
            "name": "ZIK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/284307",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein interacting with K protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 20961,
            "identifier": "11188",
            "identifier_type": "int",
            "name": "NISCH",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11188",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "nischarin"
            },
            "metanode": "Gene"
        },
        {
            "id": 20962,
            "identifier": "GO:0005046",
            "identifier_type": "str",
            "name": "KDEL sequence binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005046",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 20963,
            "identifier": "C0948522",
            "identifier_type": "str",
            "name": "Ocular vascular disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0948522",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 20964,
            "identifier": "346653",
            "identifier_type": "int",
            "name": "FAM71F2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/346653",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "family with sequence similarity 71, member F2"
            },
            "metanode": "Gene"
        },
        {
            "id": 20965,
            "identifier": "GO:0043954",
            "identifier_type": "str",
            "name": "cellular component maintenance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043954",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 20966,
            "identifier": "GO:0051898",
            "identifier_type": "str",
            "name": "negative regulation of protein kinase B signaling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051898",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}