Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=21250

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=21275",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=21225",
    "results": [
        {
            "id": 21241,
            "identifier": "GO:0052173",
            "identifier_type": "str",
            "name": "response to defenses of other organism involved in symbiotic interaction",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052173",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21242,
            "identifier": "GO:0000453",
            "identifier_type": "str",
            "name": "enzyme-directed rRNA 2'-O-methylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000453",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21243,
            "identifier": "DB00280",
            "identifier_type": "str",
            "name": "Disopyramide",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00280",
                "inchi": "InChI=1/C21H29N3O/c1-16(2)24(17(3)4)15-13-21(20(22)25,18-10-6-5-7-11-18)19-12-8-9-14-23-19/h5-12,14,16-17H,13,15H2,1-4H3,(H2,22,25)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UVTNFZQICZKOEM-UHFFFAOYNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21244,
            "identifier": "8390",
            "identifier_type": "int",
            "name": "OR1G1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8390",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "olfactory receptor, family 1, subfamily G, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21245,
            "identifier": "727800",
            "identifier_type": "int",
            "name": "RNF208",
            "properties": {
                "url": "http://identifiers.org/ncbigene/727800",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "ring finger protein 208"
            },
            "metanode": "Gene"
        },
        {
            "id": 21246,
            "identifier": "UBERON:0001759",
            "identifier_type": "str",
            "name": "vagus nerve",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001759",
                "bto_id": "BTO:0003472",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D014630"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 21247,
            "identifier": "573",
            "identifier_type": "int",
            "name": "BAG1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/573",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "BCL2-associated athanogene"
            },
            "metanode": "Gene"
        },
        {
            "id": 21248,
            "identifier": "GO:1900045",
            "identifier_type": "str",
            "name": "negative regulation of protein K63-linked ubiquitination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1900045",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21249,
            "identifier": "GO:0007260",
            "identifier_type": "str",
            "name": "tyrosine phosphorylation of STAT protein",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007260",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21250,
            "identifier": "22902",
            "identifier_type": "int",
            "name": "RUFY3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22902",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "RUN and FYVE domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 21251,
            "identifier": "113828",
            "identifier_type": "int",
            "name": "FAM83F",
            "properties": {
                "url": "http://identifiers.org/ncbigene/113828",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "family with sequence similarity 83, member F"
            },
            "metanode": "Gene"
        },
        {
            "id": 21252,
            "identifier": "4677",
            "identifier_type": "int",
            "name": "NARS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4677",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "asparaginyl-tRNA synthetase"
            },
            "metanode": "Gene"
        },
        {
            "id": 21253,
            "identifier": "GO:0021779",
            "identifier_type": "str",
            "name": "oligodendrocyte cell fate commitment",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021779",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21254,
            "identifier": "GO:0010633",
            "identifier_type": "str",
            "name": "negative regulation of epithelial cell migration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010633",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21255,
            "identifier": "GO:0045335",
            "identifier_type": "str",
            "name": "phagocytic vesicle",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045335",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 21256,
            "identifier": "7130",
            "identifier_type": "int",
            "name": "TNFAIP6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7130",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "tumor necrosis factor, alpha-induced protein 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 21257,
            "identifier": "57152",
            "identifier_type": "int",
            "name": "SLURP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57152",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "secreted LY6/PLAUR domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21258,
            "identifier": "GO:0021778",
            "identifier_type": "str",
            "name": "oligodendrocyte cell fate specification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021778",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21259,
            "identifier": "25983",
            "identifier_type": "int",
            "name": "NGDN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25983",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "neuroguidin, EIF4E binding protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 21260,
            "identifier": "UBERON:0002130",
            "identifier_type": "str",
            "name": "cerebellar nuclear complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002130",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D002529"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 21261,
            "identifier": "105371921",
            "identifier_type": "int",
            "name": "LOC105371921",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105371921",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "uncharacterized LOC105371921"
            },
            "metanode": "Gene"
        },
        {
            "id": 21262,
            "identifier": "PC7_5330",
            "identifier_type": "str",
            "name": "Metabolism of proteins",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 21263,
            "identifier": "79058",
            "identifier_type": "int",
            "name": "ASPSCR1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79058",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "alveolar soft part sarcoma chromosome region, candidate 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21264,
            "identifier": "DB09019",
            "identifier_type": "str",
            "name": "Bromhexine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB09019",
                "inchi": "InChI=1S/C14H20Br2N2/c1-18(12-5-3-2-4-6-12)9-10-7-11(15)8-13(16)14(10)17/h7-8,12H,2-6,9,17H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OJGDCBLYJGHCIH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21265,
            "identifier": "653240",
            "identifier_type": "int",
            "name": "KRTAP4-11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/653240",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "keratin associated protein 4-11"
            },
            "metanode": "Gene"
        }
    ]
}