Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=21825

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=21850",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=21800",
    "results": [
        {
            "id": 21816,
            "identifier": "DB00393",
            "identifier_type": "str",
            "name": "Nimodipine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00393",
                "inchi": "InChI=1S/C21H26N2O7/c1-12(2)30-21(25)18-14(4)22-13(3)17(20(24)29-10-9-28-5)19(18)15-7-6-8-16(11-15)23(26)27/h6-8,11-12,19,22H,9-10H2,1-5H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UIAGMCDKSXEBJQ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21817,
            "identifier": "123228",
            "identifier_type": "int",
            "name": "SENP8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/123228",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "SUMO/sentrin specific peptidase family member 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 21818,
            "identifier": "126823",
            "identifier_type": "int",
            "name": "KLHDC9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/126823",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "kelch domain containing 9"
            },
            "metanode": "Gene"
        },
        {
            "id": 21819,
            "identifier": "GO:0005720",
            "identifier_type": "str",
            "name": "nuclear heterochromatin",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005720",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 21820,
            "identifier": "64841",
            "identifier_type": "int",
            "name": "GNPNAT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64841",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "glucosamine-phosphate N-acetyltransferase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21821,
            "identifier": "101929578",
            "identifier_type": "int",
            "name": "LOC101929578",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101929578",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "transcription factor CP2-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 21822,
            "identifier": "GO:0005080",
            "identifier_type": "str",
            "name": "protein kinase C binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005080",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 21823,
            "identifier": "79627",
            "identifier_type": "int",
            "name": "OGFRL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79627",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "opioid growth factor receptor-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21824,
            "identifier": "GO:0016854",
            "identifier_type": "str",
            "name": "racemase and epimerase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016854",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 21825,
            "identifier": "C1112303",
            "identifier_type": "str",
            "name": "Facial wasting",
            "properties": {
                "url": "http://identifiers.org/umls/C1112303",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 21826,
            "identifier": "140467",
            "identifier_type": "int",
            "name": "ZNF358",
            "properties": {
                "url": "http://identifiers.org/ncbigene/140467",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 358"
            },
            "metanode": "Gene"
        },
        {
            "id": 21827,
            "identifier": "DB06795",
            "identifier_type": "str",
            "name": "Mafenide",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06795",
                "inchi": "InChI=1S/C7H10N2O2S/c8-5-6-1-3-7(4-2-6)12(9,10)11/h1-4H,5,8H2,(H2,9,10,11)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=TYMRLRRVMHJFTF-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21828,
            "identifier": "220047",
            "identifier_type": "int",
            "name": "CCDC83",
            "properties": {
                "url": "http://identifiers.org/ncbigene/220047",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "coiled-coil domain containing 83"
            },
            "metanode": "Gene"
        },
        {
            "id": 21829,
            "identifier": "GO:2000142",
            "identifier_type": "str",
            "name": "regulation of DNA-templated transcription, initiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000142",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21830,
            "identifier": "643803",
            "identifier_type": "int",
            "name": "KRTAP24-1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/643803",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "keratin associated protein 24-1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21831,
            "identifier": "GO:0015403",
            "identifier_type": "str",
            "name": "thiamine uptake transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015403",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 21832,
            "identifier": "C0242301",
            "identifier_type": "str",
            "name": "Furuncle",
            "properties": {
                "url": "http://identifiers.org/umls/C0242301",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 21833,
            "identifier": "GO:0002374",
            "identifier_type": "str",
            "name": "cytokine secretion involved in immune response",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002374",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21834,
            "identifier": "3229",
            "identifier_type": "int",
            "name": "HOXC13",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3229",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "homeobox C13"
            },
            "metanode": "Gene"
        },
        {
            "id": 21835,
            "identifier": "5682",
            "identifier_type": "int",
            "name": "PSMA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5682",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "proteasome (prosome, macropain) subunit, alpha type, 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21836,
            "identifier": "10349",
            "identifier_type": "int",
            "name": "ABCA10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10349",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "ATP-binding cassette, sub-family A (ABC1), member 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 21837,
            "identifier": "51608",
            "identifier_type": "int",
            "name": "GET4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51608",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "golgi to ER traffic protein 4 homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 21838,
            "identifier": "GO:0090579",
            "identifier_type": "str",
            "name": "dsDNA loop formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090579",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21839,
            "identifier": "GO:0044126",
            "identifier_type": "str",
            "name": "regulation of growth of symbiont in host",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044126",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21840,
            "identifier": "PC7_4780",
            "identifier_type": "str",
            "name": "Interleukin-3, 5 and GM-CSF signaling",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        }
    ]
}