Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=21900

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=21925",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=21875",
    "results": [
        {
            "id": 21891,
            "identifier": "GO:0002296",
            "identifier_type": "str",
            "name": "T-helper 1 cell lineage commitment",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002296",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21892,
            "identifier": "26751",
            "identifier_type": "int",
            "name": "SH3YL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26751",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "SH3 and SYLF domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21893,
            "identifier": "11237",
            "identifier_type": "int",
            "name": "RNF24",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11237",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "ring finger protein 24"
            },
            "metanode": "Gene"
        },
        {
            "id": 21894,
            "identifier": "DB00346",
            "identifier_type": "str",
            "name": "Alfuzosin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00346",
                "inchi": "InChI=1S/C19H27N5O4/c1-24(8-5-7-21-18(25)14-6-4-9-28-14)19-22-13-11-16(27-3)15(26-2)10-12(13)17(20)23-19/h10-11,14H,4-9H2,1-3H3,(H,21,25)(H2,20,22,23)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WNMJYKCGWZFFKR-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21895,
            "identifier": "22837",
            "identifier_type": "int",
            "name": "COBLL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22837",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "cordon-bleu WH2 repeat protein-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21896,
            "identifier": "C0555970",
            "identifier_type": "str",
            "name": "Nose infection NOS",
            "properties": {
                "url": "http://identifiers.org/umls/C0555970",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 21897,
            "identifier": "5071",
            "identifier_type": "int",
            "name": "PARK2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5071",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "parkin RBR E3 ubiquitin protein ligase"
            },
            "metanode": "Gene"
        },
        {
            "id": 21898,
            "identifier": "GO:0050072",
            "identifier_type": "str",
            "name": "m7G(5')pppN diphosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050072",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 21899,
            "identifier": "54965",
            "identifier_type": "int",
            "name": "PIGX",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54965",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "phosphatidylinositol glycan anchor biosynthesis, class X"
            },
            "metanode": "Gene"
        },
        {
            "id": 21900,
            "identifier": "DB01192",
            "identifier_type": "str",
            "name": "Oxymorphone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01192",
                "inchi": "InChI=1S/C17H19NO4/c1-18-7-6-16-13-9-2-3-10(19)14(13)22-15(16)11(20)4-5-17(16,21)12(18)8-9/h2-3,12,15,19,21H,4-8H2,1H3/t12-,15+,16+,17-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UQCNKQCJZOAFTQ-ISWURRPUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21901,
            "identifier": "54617",
            "identifier_type": "int",
            "name": "INO80",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54617",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "INO80 complex subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 21902,
            "identifier": "WP43_r84102",
            "identifier_type": "str",
            "name": "Oxidation by Cytochrome P450",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP43_r84102",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 21903,
            "identifier": "GO:0008988",
            "identifier_type": "str",
            "name": "rRNA (adenine-N6-)-methyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0008988",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 21904,
            "identifier": "C0027013",
            "identifier_type": "str",
            "name": "Myeloid metaplasia",
            "properties": {
                "url": "http://identifiers.org/umls/C0027013",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 21905,
            "identifier": "PC7_8776",
            "identifier_type": "str",
            "name": "WNT5A-dependent internalization of FZD4",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 21906,
            "identifier": "DB05013",
            "identifier_type": "str",
            "name": "Ingenol Mebutate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB05013",
                "inchi": "InChI=1S/C25H34O6/c1-7-12(2)22(29)31-21-13(3)10-24-14(4)8-17-18(23(17,5)6)16(20(24)28)9-15(11-26)19(27)25(21,24)30/h7,9-10,14,16-19,21,26-27,30H,8,11H2,1-6H3/b12-7-/t14-,16+,17-,18+,19-,21+,24+,25+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VDJHFHXMUKFKET-WDUFCVPESA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 21907,
            "identifier": "23038",
            "identifier_type": "int",
            "name": "WDTC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23038",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "WD and tetratricopeptide repeats 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 21908,
            "identifier": "7524",
            "identifier_type": "int",
            "name": "XWNPEP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7524",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "description": "X-tryptophanyl aminopeptidase"
            },
            "metanode": "Gene"
        },
        {
            "id": 21909,
            "identifier": "GO:0004815",
            "identifier_type": "str",
            "name": "aspartate-tRNA ligase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004815",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 21910,
            "identifier": "N0000011414",
            "identifier_type": "str",
            "name": "Ketolides",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000011414",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Chemical/Ingredient"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 21911,
            "identifier": "GO:0048864",
            "identifier_type": "str",
            "name": "stem cell development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048864",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 21912,
            "identifier": "222826",
            "identifier_type": "int",
            "name": "FAM217A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/222826",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "family with sequence similarity 217, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 21913,
            "identifier": "C0238309",
            "identifier_type": "str",
            "name": "Ischaemic neuropathy",
            "properties": {
                "url": "http://identifiers.org/umls/C0238309",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 21914,
            "identifier": "105369202",
            "identifier_type": "int",
            "name": "LOC105369202",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105369202",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "uncharacterized LOC105369202"
            },
            "metanode": "Gene"
        },
        {
            "id": 21915,
            "identifier": "GO:0043985",
            "identifier_type": "str",
            "name": "histone H4-R3 methylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043985",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}