Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=22075

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22100",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22050",
    "results": [
        {
            "id": 22066,
            "identifier": "80345",
            "identifier_type": "int",
            "name": "ZSCAN16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80345",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "zinc finger and SCAN domain containing 16"
            },
            "metanode": "Gene"
        },
        {
            "id": 22067,
            "identifier": "54487",
            "identifier_type": "int",
            "name": "DGCR8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54487",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "DGCR8 microprocessor complex subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 22068,
            "identifier": "DB00186",
            "identifier_type": "str",
            "name": "Lorazepam",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00186",
                "inchi": "InChI=1S/C15H10Cl2N2O2/c16-8-5-6-12-10(7-8)13(19-15(21)14(20)18-12)9-3-1-2-4-11(9)17/h1-7,15,21H,(H,18,20)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=DIWRORZWFLOCLC-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22069,
            "identifier": "GO:0034196",
            "identifier_type": "str",
            "name": "acylglycerol transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034196",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22070,
            "identifier": "GO:0050882",
            "identifier_type": "str",
            "name": "voluntary musculoskeletal movement",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050882",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22071,
            "identifier": "DB00928",
            "identifier_type": "str",
            "name": "Azacitidine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00928",
                "inchi": "InChI=1S/C8H12N4O5/c9-7-10-2-12(8(16)11-7)6-5(15)4(14)3(1-13)17-6/h2-6,13-15H,1H2,(H2,9,11,16)/t3-,4-,5-,6-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NMUSYJAQQFHJEW-KVTDHHQDSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22072,
            "identifier": "6790",
            "identifier_type": "int",
            "name": "AURKA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6790",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "aurora kinase A"
            },
            "metanode": "Gene"
        },
        {
            "id": 22635,
            "identifier": "GO:0042382",
            "identifier_type": "str",
            "name": "paraspeckles",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042382",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 22073,
            "identifier": "56940",
            "identifier_type": "int",
            "name": "DUSP22",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56940",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "dual specificity phosphatase 22"
            },
            "metanode": "Gene"
        },
        {
            "id": 22074,
            "identifier": "GO:0021587",
            "identifier_type": "str",
            "name": "cerebellum morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021587",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22075,
            "identifier": "GO:0004758",
            "identifier_type": "str",
            "name": "serine C-palmitoyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004758",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 22076,
            "identifier": "101930168",
            "identifier_type": "int",
            "name": "LOC101930168",
            "properties": {
                "url": "http://identifiers.org/ncbigene/101930168",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "putative aquaporin-7-like protein 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 22077,
            "identifier": "388559",
            "identifier_type": "int",
            "name": "ZNF888",
            "properties": {
                "url": "http://identifiers.org/ncbigene/388559",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 888"
            },
            "metanode": "Gene"
        },
        {
            "id": 22078,
            "identifier": "DB08874",
            "identifier_type": "str",
            "name": "Fidaxomicin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08874",
                "inchi": "InChI=1S/C52H74Cl2O18/c1-13-30-22-26(6)33(56)18-16-15-17-31(23-66-51-45(65-12)42(61)44(29(9)67-51)69-49(64)35-32(14-2)36(53)39(58)37(54)38(35)57)48(63)68-34(28(8)55)20-19-25(5)21-27(7)43(30)70-50-41(60)40(59)46(52(10,11)72-50)71-47(62)24(3)4/h15-17,19,21-22,24,28-30,33-34,40-46,50-51,55-61H,13-14,18,20,23H2,1-12H3/b16-15+,25-19+,26-22+,27-21+,31-17+/t28-,29-,30+,33+,34?,40-,41+,42+,43+,44-,45+,46+,50-,51-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZVGNESXIJDCBKN-KFGPIHIUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22079,
            "identifier": "GO:0070681",
            "identifier_type": "str",
            "name": "glutaminyl-tRNAGln biosynthesis via transamidation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070681",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22080,
            "identifier": "1622",
            "identifier_type": "int",
            "name": "DBI",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1622",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)"
            },
            "metanode": "Gene"
        },
        {
            "id": 22081,
            "identifier": "10113",
            "identifier_type": "int",
            "name": "PREB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10113",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "prolactin regulatory element binding"
            },
            "metanode": "Gene"
        },
        {
            "id": 22082,
            "identifier": "GO:0072349",
            "identifier_type": "str",
            "name": "modified amino acid transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072349",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 22083,
            "identifier": "GO:0014908",
            "identifier_type": "str",
            "name": "myotube differentiation involved in skeletal muscle regeneration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0014908",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22084,
            "identifier": "DB00994",
            "identifier_type": "str",
            "name": "Neomycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00994",
                "inchi": "InChI=1S/C23H46N6O13/c24-2-7-13(32)15(34)10(28)21(37-7)40-18-6(27)1-5(26)12(31)20(18)42-23-17(36)19(9(4-30)39-23)41-22-11(29)16(35)14(33)8(3-25)38-22/h5-23,30-36H,1-4,24-29H2/t5-,6+,7-,8+,9-,10-,11-,12+,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=PGBHMTALBVVCIT-VCIWKGPPSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22085,
            "identifier": "340990",
            "identifier_type": "int",
            "name": "OTOG",
            "properties": {
                "url": "http://identifiers.org/ncbigene/340990",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "otogelin"
            },
            "metanode": "Gene"
        },
        {
            "id": 22086,
            "identifier": "2767",
            "identifier_type": "int",
            "name": "GNA11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2767",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "guanine nucleotide binding protein (G protein), alpha 11 (Gq class)"
            },
            "metanode": "Gene"
        },
        {
            "id": 22087,
            "identifier": "GO:1903504",
            "identifier_type": "str",
            "name": "regulation of mitotic spindle checkpoint",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903504",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22088,
            "identifier": "58508",
            "identifier_type": "int",
            "name": "KMT2C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/58508",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "lysine (K)-specific methyltransferase 2C"
            },
            "metanode": "Gene"
        },
        {
            "id": 22089,
            "identifier": "GO:0033065",
            "identifier_type": "str",
            "name": "Rad51C-XRCC3 complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033065",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        }
    ]
}