Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=22225

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22250",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22200",
    "results": [
        {
            "id": 22215,
            "identifier": "GO:0046546",
            "identifier_type": "str",
            "name": "development of primary male sexual characteristics",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046546",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22216,
            "identifier": "284207",
            "identifier_type": "int",
            "name": "METRNL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/284207",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "meteorin, glial cell differentiation regulator-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 22217,
            "identifier": "GO:0070561",
            "identifier_type": "str",
            "name": "vitamin D receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070561",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22218,
            "identifier": "11200",
            "identifier_type": "int",
            "name": "CHEK2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11200",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "checkpoint kinase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 22219,
            "identifier": "DB08934",
            "identifier_type": "str",
            "name": "Sofosbuvir",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08934",
                "inchi": "InChI=1/C22H29FN3O9P/c1-13(2)33-19(29)14(3)25-36(31,35-15-8-6-5-7-9-15)32-12-16-18(28)22(4,23)20(34-16)26-11-10-17(27)24-21(26)30/h5-11,13-14,16,18,20,28H,12H2,1-4H3,(H,25,31)(H,24,27,30)/t14-,16?,18+,20+,22+,36-/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=TTZHDVOVKQGIBA-YUFAQMEMNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22220,
            "identifier": "GO:1903715",
            "identifier_type": "str",
            "name": "regulation of aerobic respiration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903715",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22221,
            "identifier": "91522",
            "identifier_type": "int",
            "name": "COL23A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/91522",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "collagen, type XXIII, alpha 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 22222,
            "identifier": "100129128",
            "identifier_type": "int",
            "name": "KHDC1L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100129128",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "KH homology domain containing 1-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 22223,
            "identifier": "GO:0071259",
            "identifier_type": "str",
            "name": "cellular response to magnetism",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071259",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22224,
            "identifier": "C0003813",
            "identifier_type": "str",
            "name": "Sinus arrhythmia",
            "properties": {
                "url": "http://identifiers.org/umls/C0003813",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 22225,
            "identifier": "C2945586",
            "identifier_type": "str",
            "name": "Bladder irritation",
            "properties": {
                "url": "http://identifiers.org/umls/C2945586",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 22226,
            "identifier": "54928",
            "identifier_type": "int",
            "name": "IMPAD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54928",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "inositol monophosphatase domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 22227,
            "identifier": "GO:0007289",
            "identifier_type": "str",
            "name": "spermatid nucleus differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007289",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22228,
            "identifier": "DB00734",
            "identifier_type": "str",
            "name": "Risperidone",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00734",
                "inchi": "InChI=1S/C23H27FN4O2/c1-15-18(23(29)28-10-3-2-4-21(28)25-15)9-13-27-11-7-16(8-12-27)22-19-6-5-17(24)14-20(19)30-26-22/h5-6,14,16H,2-4,7-13H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RAPZEAPATHNIPO-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22229,
            "identifier": "23001",
            "identifier_type": "int",
            "name": "WDFY3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23001",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "WD repeat and FYVE domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 22230,
            "identifier": "C0236816",
            "identifier_type": "str",
            "name": "Acute stress disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0236816",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 22231,
            "identifier": "10279",
            "identifier_type": "int",
            "name": "PRSS16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10279",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "protease, serine, 16 (thymus)"
            },
            "metanode": "Gene"
        },
        {
            "id": 22232,
            "identifier": "GO:0040015",
            "identifier_type": "str",
            "name": "negative regulation of multicellular organism growth",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0040015",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22233,
            "identifier": "151246",
            "identifier_type": "int",
            "name": "SGOL2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/151246",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "shugoshin-like 2 (S. pombe)"
            },
            "metanode": "Gene"
        },
        {
            "id": 22234,
            "identifier": "GO:1990454",
            "identifier_type": "str",
            "name": "L-type voltage-gated calcium channel complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1990454",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 22235,
            "identifier": "149603",
            "identifier_type": "int",
            "name": "RNF187",
            "properties": {
                "url": "http://identifiers.org/ncbigene/149603",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ring finger protein 187"
            },
            "metanode": "Gene"
        },
        {
            "id": 22236,
            "identifier": "3017",
            "identifier_type": "int",
            "name": "HIST1H2BD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3017",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "histone cluster 1, H2bd"
            },
            "metanode": "Gene"
        },
        {
            "id": 22237,
            "identifier": "GO:1902024",
            "identifier_type": "str",
            "name": "L-histidine transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1902024",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22238,
            "identifier": "57578",
            "identifier_type": "int",
            "name": "UNC79",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57578",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "unc-79 homolog (C. elegans)"
            },
            "metanode": "Gene"
        },
        {
            "id": 22239,
            "identifier": "56648",
            "identifier_type": "int",
            "name": "EIF5A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56648",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "eukaryotic translation initiation factor 5A2"
            },
            "metanode": "Gene"
        }
    ]
}