Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=2250
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2275", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2225", "results": [ { "id": 2242, "identifier": "GO:0045523", "identifier_type": "str", "name": "interleukin-27 receptor binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0045523", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 2243, "identifier": "6402", "identifier_type": "int", "name": "SELL", "properties": { "url": "http://identifiers.org/ncbigene/6402", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "selectin L" }, "metanode": "Gene" }, { "id": 2244, "identifier": "GO:0034643", "identifier_type": "str", "name": "establishment of mitochondrion localization, microtubule-mediated", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0034643", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 2245, "identifier": "65059", "identifier_type": "int", "name": "RAPH1", "properties": { "url": "http://identifiers.org/ncbigene/65059", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "Ras association (RalGDS/AF-6) and pleckstrin homology domains 1" }, "metanode": "Gene" }, { "id": 2246, "identifier": "101929924", "identifier_type": "int", "name": "LOC101929924", "properties": { "url": "http://identifiers.org/ncbigene/101929924", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "uncharacterized LOC101929924" }, "metanode": "Gene" }, { "id": 2247, "identifier": "102724991", "identifier_type": "int", "name": "LOC102724991", "properties": { "url": "http://identifiers.org/ncbigene/102724991", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta" }, "metanode": "Gene" }, { "id": 2248, "identifier": "GO:0070252", "identifier_type": "str", "name": "actin-mediated cell contraction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070252", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 2249, "identifier": "1234", "identifier_type": "int", "name": "CCR5", "properties": { "url": "http://identifiers.org/ncbigene/1234", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "chemokine (C-C motif) receptor 5 (gene/pseudogene)" }, "metanode": "Gene" }, { "id": 2250, "identifier": "9741", "identifier_type": "int", "name": "LAPTM4A", "properties": { "url": "http://identifiers.org/ncbigene/9741", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "lysosomal protein transmembrane 4 alpha" }, "metanode": "Gene" }, { "id": 2318, "identifier": "GO:0042320", "identifier_type": "str", "name": "regulation of circadian sleep/wake cycle, REM sleep", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0042320", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 2251, "identifier": "51128", "identifier_type": "int", "name": "SAR1B", "properties": { "url": "http://identifiers.org/ncbigene/51128", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "5", "description": "secretion associated, Ras related GTPase 1B" }, "metanode": "Gene" }, { "id": 2252, "identifier": "GO:0003134", "identifier_type": "str", "name": "endodermal-mesodermal cell signaling involved in heart induction", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0003134", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 2253, "identifier": "DB01070", "identifier_type": "str", "name": "Dihydrotachysterol", "properties": { "url": "http://www.drugbank.ca/drugs/DB01070", "inchi": "InChI=1S/C28H46O/c1-19(2)20(3)9-10-22(5)26-15-16-27-23(8-7-17-28(26,27)6)12-13-24-18-25(29)14-11-21(24)4/h9-10,12-13,19-22,25-27,29H,7-8,11,14-18H2,1-6H3/b10-9+,23-12+,24-13+/t20-,21-,22+,25-,26+,27-,28+/m0/s1", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=ILYCWAKSDCYMBB-OPCMSESCSA-N" }, "metanode": "Compound" }, { "id": 2254, "identifier": "C3267019", "identifier_type": "str", "name": "Central nervous system haemorrhage", "properties": { "url": "http://identifiers.org/umls/C3267019", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 2255, "identifier": "340602", "identifier_type": "int", "name": "CXorf67", "properties": { "url": "http://identifiers.org/ncbigene/340602", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "chromosome X open reading frame 67" }, "metanode": "Gene" }, { "id": 2256, "identifier": "3703", "identifier_type": "int", "name": "STT3A", "properties": { "url": "http://identifiers.org/ncbigene/3703", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "STT3A, subunit of the oligosaccharyltransferase complex (catalytic)" }, "metanode": "Gene" }, { "id": 2257, "identifier": "GO:0003228", "identifier_type": "str", "name": "atrial cardiac muscle tissue development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0003228", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 2258, "identifier": "GO:0004352", "identifier_type": "str", "name": "glutamate dehydrogenase (NAD+) activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0004352", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 2259, "identifier": "C0333243", "identifier_type": "str", "name": "Pitting edema", "properties": { "url": "http://identifiers.org/umls/C0333243", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 2260, "identifier": "11219", "identifier_type": "int", "name": "TREX2", "properties": { "url": "http://identifiers.org/ncbigene/11219", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "three prime repair exonuclease 2" }, "metanode": "Gene" }, { "id": 2261, "identifier": "GO:0008174", "identifier_type": "str", "name": "mRNA methyltransferase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0008174", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 2262, "identifier": "391322", "identifier_type": "int", "name": "LOC391322", "properties": { "url": "http://identifiers.org/ncbigene/391322", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "22", "description": "D-dopachrome tautomerase-like" }, "metanode": "Gene" }, { "id": 2263, "identifier": "C1142499", "identifier_type": "str", "name": "Gastrointestinal toxicity", "properties": { "url": "http://identifiers.org/umls/C1142499", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 2264, "identifier": "GO:0035511", "identifier_type": "str", "name": "oxidative DNA demethylation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0035511", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 2265, "identifier": "729220", "identifier_type": "int", "name": "FLJ45513", "properties": { "url": "http://identifiers.org/ncbigene/729220", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "uncharacterized LOC729220" }, "metanode": "Gene" } ] }{ "count": 47031, "next": "