Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=22600

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22625",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22575",
    "results": [
        {
            "id": 22589,
            "identifier": "90874",
            "identifier_type": "int",
            "name": "ZNF697",
            "properties": {
                "url": "http://identifiers.org/ncbigene/90874",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "zinc finger protein 697"
            },
            "metanode": "Gene"
        },
        {
            "id": 22590,
            "identifier": "54914",
            "identifier_type": "int",
            "name": "FOCAD",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54914",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "focadhesin"
            },
            "metanode": "Gene"
        },
        {
            "id": 22591,
            "identifier": "84708",
            "identifier_type": "int",
            "name": "LNX1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84708",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "ligand of numb-protein X 1, E3 ubiquitin protein ligase"
            },
            "metanode": "Gene"
        },
        {
            "id": 22592,
            "identifier": "GO:0019201",
            "identifier_type": "str",
            "name": "nucleotide kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019201",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 22593,
            "identifier": "254827",
            "identifier_type": "int",
            "name": "NAALADL2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/254827",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "N-acetylated alpha-linked acidic dipeptidase-like 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 22594,
            "identifier": "6727",
            "identifier_type": "int",
            "name": "SRP14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6727",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "signal recognition particle 14kDa (homologous Alu RNA binding protein)"
            },
            "metanode": "Gene"
        },
        {
            "id": 22595,
            "identifier": "UBERON:0002349",
            "identifier_type": "str",
            "name": "myocardium",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002349",
                "bto_id": "BTO:0000901",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D009206"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 22596,
            "identifier": "GO:0021884",
            "identifier_type": "str",
            "name": "forebrain neuron development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021884",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22597,
            "identifier": "257152",
            "identifier_type": "int",
            "name": "LOC257152",
            "properties": {
                "url": "http://identifiers.org/ncbigene/257152",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "uncharacterized LOC257152"
            },
            "metanode": "Gene"
        },
        {
            "id": 22598,
            "identifier": "1303",
            "identifier_type": "int",
            "name": "COL12A1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1303",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "collagen, type XII, alpha 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 22599,
            "identifier": "10050",
            "identifier_type": "int",
            "name": "SLC17A4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10050",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "solute carrier family 17, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 22600,
            "identifier": "DB01400",
            "identifier_type": "str",
            "name": "Neostigmine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01400",
                "inchi": "InChI=1S/C12H19N2O2/c1-13(2)12(15)16-11-8-6-7-10(9-11)14(3,4)5/h6-9H,1-5H3/q+1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ALWKGYPQUAPLQC-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22601,
            "identifier": "GO:0048671",
            "identifier_type": "str",
            "name": "negative regulation of collateral sprouting",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048671",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22602,
            "identifier": "GO:0061578",
            "identifier_type": "str",
            "name": "Lys63-specific deubiquitinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061578",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 22603,
            "identifier": "DB00691",
            "identifier_type": "str",
            "name": "Moexipril",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00691",
                "inchi": "InChI=1S/C27H34N2O7/c1-5-36-27(33)21(12-11-18-9-7-6-8-10-18)28-17(2)25(30)29-16-20-15-24(35-4)23(34-3)14-19(20)13-22(29)26(31)32/h6-10,14-15,17,21-22,28H,5,11-13,16H2,1-4H3,(H,31,32)/t17-,21-,22-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UWWDHYUMIORJTA-HSQYWUDLSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22604,
            "identifier": "3756",
            "identifier_type": "int",
            "name": "KCNH1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3756",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "potassium channel, voltage gated eag related subfamily H, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 22605,
            "identifier": "440533",
            "identifier_type": "int",
            "name": "PSG8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/440533",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "pregnancy specific beta-1-glycoprotein 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 22606,
            "identifier": "GO:0030328",
            "identifier_type": "str",
            "name": "prenylcysteine catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030328",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22607,
            "identifier": "2241",
            "identifier_type": "int",
            "name": "FER",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2241",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "fer (fps/fes related) tyrosine kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 22608,
            "identifier": "10876",
            "identifier_type": "int",
            "name": "EDDM3A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10876",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "epididymal protein 3A"
            },
            "metanode": "Gene"
        },
        {
            "id": 22609,
            "identifier": "GO:0006301",
            "identifier_type": "str",
            "name": "postreplication repair",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006301",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22610,
            "identifier": "55181",
            "identifier_type": "int",
            "name": "SMG8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55181",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "SMG8 nonsense mediated mRNA decay factor"
            },
            "metanode": "Gene"
        },
        {
            "id": 22611,
            "identifier": "C0034882",
            "identifier_type": "str",
            "name": "Rectal disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0034882",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 22612,
            "identifier": "UBERON:0002298",
            "identifier_type": "str",
            "name": "brainstem",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002298",
                "bto_id": "BTO:0000146",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D001933"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 22613,
            "identifier": "105376056",
            "identifier_type": "int",
            "name": "LOC105376056",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105376056",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "putative zinc finger protein LOC441666"
            },
            "metanode": "Gene"
        }
    ]
}