Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=2275

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2300",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2250",
    "results": [
        {
            "id": 2266,
            "identifier": "124936",
            "identifier_type": "int",
            "name": "CYB5D2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/124936",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "cytochrome b5 domain containing 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 2267,
            "identifier": "25819",
            "identifier_type": "int",
            "name": "CCRN4L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25819",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "CCR4 carbon catabolite repression 4-like (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 2268,
            "identifier": "1558",
            "identifier_type": "int",
            "name": "CYP2C8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1558",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "cytochrome P450, family 2, subfamily C, polypeptide 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 2269,
            "identifier": "55361",
            "identifier_type": "int",
            "name": "PI4K2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55361",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "phosphatidylinositol 4-kinase type 2 alpha"
            },
            "metanode": "Gene"
        },
        {
            "id": 2270,
            "identifier": "GO:1903894",
            "identifier_type": "str",
            "name": "regulation of IRE1-mediated unfolded protein response",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903894",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2271,
            "identifier": "C0600142",
            "identifier_type": "str",
            "name": "Hot flush",
            "properties": {
                "url": "http://identifiers.org/umls/C0600142",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2272,
            "identifier": "8678",
            "identifier_type": "int",
            "name": "BECN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8678",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "beclin 1, autophagy related"
            },
            "metanode": "Gene"
        },
        {
            "id": 2273,
            "identifier": "8906",
            "identifier_type": "int",
            "name": "AP1G2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8906",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "adaptor-related protein complex 1, gamma 2 subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 2274,
            "identifier": "GO:0038052",
            "identifier_type": "str",
            "name": "RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0038052",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 2275,
            "identifier": "PC7_3777",
            "identifier_type": "str",
            "name": "Extracellular matrix organization",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 2276,
            "identifier": "GO:0009378",
            "identifier_type": "str",
            "name": "four-way junction helicase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009378",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 2277,
            "identifier": "DB00803",
            "identifier_type": "str",
            "name": "Colistin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00803",
                "inchi": "InChI=1S/C52H98N16O13/c1-9-29(6)11-10-12-40(71)59-32(13-19-53)47(76)68-42(31(8)70)52(81)64-35(16-22-56)44(73)63-37-18-24-58-51(80)41(30(7)69)67-48(77)36(17-23-57)61-43(72)33(14-20-54)62-49(78)38(25-27(2)3)66-50(79)39(26-28(4)5)65-45(74)34(15-21-55)60-46(37)75/h27-39,41-42,69-70H,9-26,53-57H2,1-8H3,(H,58,80)(H,59,71)(H,60,75)(H,61,72)(H,62,78)(H,63,73)(H,64,81)(H,65,74)(H,66,79)(H,67,77)(H,68,76)/t29?,30-,31-,32+,33+,34+,35+,36+,37+,38+,39-,41+,42+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=YKQOSKADJPQZHB-QNPLFGSASA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 2278,
            "identifier": "GO:0000105",
            "identifier_type": "str",
            "name": "histidine biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000105",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2279,
            "identifier": "GO:0003337",
            "identifier_type": "str",
            "name": "mesenchymal to epithelial transition involved in metanephros morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003337",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2280,
            "identifier": "11131",
            "identifier_type": "int",
            "name": "CAPN11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11131",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "calpain 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 2281,
            "identifier": "UBERON:0001264",
            "identifier_type": "str",
            "name": "pancreas",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001264",
                "bto_id": "BTO:0000988",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D010179"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 2282,
            "identifier": "29058",
            "identifier_type": "int",
            "name": "TMEM230",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29058",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "transmembrane protein 230"
            },
            "metanode": "Gene"
        },
        {
            "id": 2888,
            "identifier": "D011141",
            "identifier_type": "str",
            "name": "Polyuria",
            "properties": {
                "url": "http://identifiers.org/mesh/D011141",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 2283,
            "identifier": "GO:0047223",
            "identifier_type": "str",
            "name": "beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0047223",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 2284,
            "identifier": "GO:0002701",
            "identifier_type": "str",
            "name": "negative regulation of production of molecular mediator of immune response",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002701",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2285,
            "identifier": "GO:0034389",
            "identifier_type": "str",
            "name": "lipid particle organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034389",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2286,
            "identifier": "GO:0006493",
            "identifier_type": "str",
            "name": "protein O-linked glycosylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006493",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2287,
            "identifier": "28970",
            "identifier_type": "int",
            "name": "C11orf54",
            "properties": {
                "url": "http://identifiers.org/ncbigene/28970",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "chromosome 11 open reading frame 54"
            },
            "metanode": "Gene"
        },
        {
            "id": 2288,
            "identifier": "54987",
            "identifier_type": "int",
            "name": "C1orf123",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54987",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "chromosome 1 open reading frame 123"
            },
            "metanode": "Gene"
        },
        {
            "id": 2289,
            "identifier": "GO:0003365",
            "identifier_type": "str",
            "name": "establishment of cell polarity involved in ameboidal cell migration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003365",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}