Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=23000

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=23025",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=22975",
    "results": [
        {
            "id": 22990,
            "identifier": "GO:0071482",
            "identifier_type": "str",
            "name": "cellular response to light stimulus",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071482",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22991,
            "identifier": "GO:0051590",
            "identifier_type": "str",
            "name": "positive regulation of neurotransmitter transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051590",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22992,
            "identifier": "GO:0055005",
            "identifier_type": "str",
            "name": "ventricular cardiac myofibril assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0055005",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22993,
            "identifier": "C0020649",
            "identifier_type": "str",
            "name": "Hypotension",
            "properties": {
                "url": "http://identifiers.org/umls/C0020649",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23247,
            "identifier": "PC7_5527",
            "identifier_type": "str",
            "name": "Mitotic Anaphase",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 22994,
            "identifier": "9146",
            "identifier_type": "int",
            "name": "HGS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9146",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "hepatocyte growth factor-regulated tyrosine kinase substrate"
            },
            "metanode": "Gene"
        },
        {
            "id": 22995,
            "identifier": "GO:0031345",
            "identifier_type": "str",
            "name": "negative regulation of cell projection organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031345",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22996,
            "identifier": "GO:0043497",
            "identifier_type": "str",
            "name": "regulation of protein heterodimerization activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043497",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 22997,
            "identifier": "81847",
            "identifier_type": "int",
            "name": "RNF146",
            "properties": {
                "url": "http://identifiers.org/ncbigene/81847",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "ring finger protein 146"
            },
            "metanode": "Gene"
        },
        {
            "id": 22998,
            "identifier": "DB00535",
            "identifier_type": "str",
            "name": "Cefdinir",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00535",
                "inchi": "InChI=1S/C14H13N5O5S2/c1-2-5-3-25-12-8(11(21)19(12)9(5)13(22)23)17-10(20)7(18-24)6-4-26-14(15)16-6/h2,4,8,12,24H,1,3H2,(H2,15,16)(H,17,20)(H,22,23)/b18-7-/t8-,12-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RTXOFQZKPXMALH-GHXIOONMSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 22999,
            "identifier": "27241",
            "identifier_type": "int",
            "name": "BBS9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/27241",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "Bardet-Biedl syndrome 9"
            },
            "metanode": "Gene"
        },
        {
            "id": 23000,
            "identifier": "2980",
            "identifier_type": "int",
            "name": "GUCA2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2980",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "guanylate cyclase activator 2A (guanylin)"
            },
            "metanode": "Gene"
        },
        {
            "id": 23001,
            "identifier": "57669",
            "identifier_type": "int",
            "name": "EPB41L5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57669",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "erythrocyte membrane protein band 4.1 like 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 23002,
            "identifier": "164592",
            "identifier_type": "int",
            "name": "CCDC116",
            "properties": {
                "url": "http://identifiers.org/ncbigene/164592",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "coiled-coil domain containing 116"
            },
            "metanode": "Gene"
        },
        {
            "id": 23003,
            "identifier": "C0423281",
            "identifier_type": "str",
            "name": "Anterior chamber flare",
            "properties": {
                "url": "http://identifiers.org/umls/C0423281",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23004,
            "identifier": "80332",
            "identifier_type": "int",
            "name": "ADAM33",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80332",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "ADAM metallopeptidase domain 33"
            },
            "metanode": "Gene"
        },
        {
            "id": 23005,
            "identifier": "100129543",
            "identifier_type": "int",
            "name": "ZNF730",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100129543",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 730"
            },
            "metanode": "Gene"
        },
        {
            "id": 23006,
            "identifier": "GO:0044869",
            "identifier_type": "str",
            "name": "negative regulation by host of viral exo-alpha-sialidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044869",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23007,
            "identifier": "DB01340",
            "identifier_type": "str",
            "name": "Cilazapril",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01340",
                "inchi": "InChI=1S/C22H31N3O5/c1-2-30-22(29)18(13-12-16-8-4-3-5-9-16)23-17-10-6-14-24-15-7-11-19(21(27)28)25(24)20(17)26/h3-5,8-9,17-19,23H,2,6-7,10-15H2,1H3,(H,27,28)/t17-,18-,19-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HHHKFGXWKKUNCY-FHWLQOOXSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 23008,
            "identifier": "283219",
            "identifier_type": "int",
            "name": "KCTD21",
            "properties": {
                "url": "http://identifiers.org/ncbigene/283219",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "potassium channel tetramerization domain containing 21"
            },
            "metanode": "Gene"
        },
        {
            "id": 23009,
            "identifier": "GO:0055023",
            "identifier_type": "str",
            "name": "positive regulation of cardiac muscle tissue growth",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0055023",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23010,
            "identifier": "C0521540",
            "identifier_type": "str",
            "name": "Brain stem haemorrhage",
            "properties": {
                "url": "http://identifiers.org/umls/C0521540",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23011,
            "identifier": "51375",
            "identifier_type": "int",
            "name": "SNX7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51375",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "sorting nexin 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 23012,
            "identifier": "C0002063",
            "identifier_type": "str",
            "name": "Alkalosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0002063",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23013,
            "identifier": "UBERON:0000011",
            "identifier_type": "str",
            "name": "parasympathetic nervous system",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0000011",
                "bto_id": "BTO:0001833",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D010275"
            },
            "metanode": "Anatomy"
        }
    ]
}