Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=23375

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=23400",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=23350",
    "results": [
        {
            "id": 23368,
            "identifier": "C0040435",
            "identifier_type": "str",
            "name": "Tooth disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0040435",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23369,
            "identifier": "84671",
            "identifier_type": "int",
            "name": "ZNF347",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84671",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 347"
            },
            "metanode": "Gene"
        },
        {
            "id": 23370,
            "identifier": "C0574770",
            "identifier_type": "str",
            "name": "Body hair loss",
            "properties": {
                "url": "http://identifiers.org/umls/C0574770",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23371,
            "identifier": "C0270697",
            "identifier_type": "str",
            "name": "Lumbar puncture headache",
            "properties": {
                "url": "http://identifiers.org/umls/C0270697",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23372,
            "identifier": "GO:0010927",
            "identifier_type": "str",
            "name": "cellular component assembly involved in morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010927",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23373,
            "identifier": "DB00256",
            "identifier_type": "str",
            "name": "Lymecycline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00256",
                "inchi": "InChI=1S/C29H38N4O10/c1-28(42)13-7-6-9-17(34)18(13)22(35)19-14(28)11-15-21(33(2)3)23(36)20(25(38)29(15,43)24(19)37)26(39)32-12-31-10-5-4-8-16(30)27(40)41/h6-7,9,14-16,21,31,34,36-37,42-43H,4-5,8,10-12,30H2,1-3H3,(H,32,39)(H,40,41)/t14-,15-,16-,21-,28+,29-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=AHEVKYYGXVEWNO-UEPZRUIBSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 23374,
            "identifier": "GO:0042661",
            "identifier_type": "str",
            "name": "regulation of mesodermal cell fate specification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042661",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23375,
            "identifier": "6674",
            "identifier_type": "int",
            "name": "SPAG1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6674",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "sperm associated antigen 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 23376,
            "identifier": "GO:0000444",
            "identifier_type": "str",
            "name": "MIS12/MIND type complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000444",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 23377,
            "identifier": "126299",
            "identifier_type": "int",
            "name": "ZNF428",
            "properties": {
                "url": "http://identifiers.org/ncbigene/126299",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 428"
            },
            "metanode": "Gene"
        },
        {
            "id": 23378,
            "identifier": "GO:0045401",
            "identifier_type": "str",
            "name": "positive regulation of interleukin-3 biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045401",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23379,
            "identifier": "1506",
            "identifier_type": "int",
            "name": "CTRL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1506",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "chymotrypsin-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 23380,
            "identifier": "10013",
            "identifier_type": "int",
            "name": "HDAC6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10013",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "histone deacetylase 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 23381,
            "identifier": "170627",
            "identifier_type": "int",
            "name": "XAGE5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/170627",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "X antigen family, member 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 23382,
            "identifier": "GO:0035601",
            "identifier_type": "str",
            "name": "protein deacylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035601",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23383,
            "identifier": "GO:1902229",
            "identifier_type": "str",
            "name": "regulation of intrinsic apoptotic signaling pathway in response to DNA damage",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1902229",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23384,
            "identifier": "5432",
            "identifier_type": "int",
            "name": "POLR2C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5432",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "polymerase (RNA) II (DNA directed) polypeptide C, 33kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 23385,
            "identifier": "UBERON:0001777",
            "identifier_type": "str",
            "name": "substantia propria of cornea",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0001777",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D003319"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 23386,
            "identifier": "8370",
            "identifier_type": "int",
            "name": "HIST2H4A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8370",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "histone cluster 2, H4a"
            },
            "metanode": "Gene"
        },
        {
            "id": 23387,
            "identifier": "DB01418",
            "identifier_type": "str",
            "name": "Acenocoumarol",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01418",
                "inchi": "InChI=1S/C19H15NO6/c1-11(21)10-15(12-6-8-13(9-7-12)20(24)25)17-18(22)14-4-2-3-5-16(14)26-19(17)23/h2-9,15,22H,10H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VABCILAOYCMVPS-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 23388,
            "identifier": "79843",
            "identifier_type": "int",
            "name": "FAM124B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79843",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "family with sequence similarity 124B"
            },
            "metanode": "Gene"
        },
        {
            "id": 23389,
            "identifier": "GO:0032515",
            "identifier_type": "str",
            "name": "negative regulation of phosphoprotein phosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032515",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23390,
            "identifier": "GO:0042975",
            "identifier_type": "str",
            "name": "peroxisome proliferator activated receptor binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042975",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 23391,
            "identifier": "105377813",
            "identifier_type": "int",
            "name": "LOC105377813",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105377813",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "endogenous retrovirus group K member 11 Pol protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 23392,
            "identifier": "2204",
            "identifier_type": "int",
            "name": "FCAR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2204",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "Fc fragment of IgA receptor"
            },
            "metanode": "Gene"
        }
    ]
}