Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=23450

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=23475",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=23425",
    "results": [
        {
            "id": 23443,
            "identifier": "375298",
            "identifier_type": "int",
            "name": "CERKL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/375298",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "ceramide kinase-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 23444,
            "identifier": "GO:0048850",
            "identifier_type": "str",
            "name": "hypophysis morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048850",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23445,
            "identifier": "GO:0006703",
            "identifier_type": "str",
            "name": "estrogen biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006703",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23446,
            "identifier": "DB00887",
            "identifier_type": "str",
            "name": "Bumetanide",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00887",
                "inchi": "InChI=1S/C17H20N2O5S/c1-2-3-9-19-14-10-12(17(20)21)11-15(25(18,22)23)16(14)24-13-7-5-4-6-8-13/h4-8,10-11,19H,2-3,9H2,1H3,(H,20,21)(H2,18,22,23)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=MAEIEVLCKWDQJH-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 23447,
            "identifier": "GO:0051707",
            "identifier_type": "str",
            "name": "response to other organism",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051707",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23448,
            "identifier": "C0022656",
            "identifier_type": "str",
            "name": "Renal cortical necrosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0022656",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23449,
            "identifier": "C0001957",
            "identifier_type": "str",
            "name": "Delirium tremens",
            "properties": {
                "url": "http://identifiers.org/umls/C0001957",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23450,
            "identifier": "PC7_8664",
            "identifier_type": "str",
            "name": "VEGFA-VEGFR2 Pathway",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 23451,
            "identifier": "3092",
            "identifier_type": "int",
            "name": "HIP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3092",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "huntingtin interacting protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 23452,
            "identifier": "C0264734",
            "identifier_type": "str",
            "name": "Dilatation atrial",
            "properties": {
                "url": "http://identifiers.org/umls/C0264734",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 23453,
            "identifier": "GO:0072277",
            "identifier_type": "str",
            "name": "metanephric glomerular capillary formation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072277",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23454,
            "identifier": "GO:0060828",
            "identifier_type": "str",
            "name": "regulation of canonical Wnt signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060828",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23455,
            "identifier": "WP2879_r79602",
            "identifier_type": "str",
            "name": "Farnesoid X Receptor  Pathway",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2879_r79602",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 23456,
            "identifier": "DB01244",
            "identifier_type": "str",
            "name": "Bepridil",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01244",
                "inchi": "InChI=1S/C24H34N2O/c1-21(2)19-27-20-24(25-15-9-10-16-25)18-26(23-13-7-4-8-14-23)17-22-11-5-3-6-12-22/h3-8,11-14,21,24H,9-10,15-20H2,1-2H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UIEATEWHFDRYRU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 23457,
            "identifier": "GO:0071803",
            "identifier_type": "str",
            "name": "positive regulation of podosome assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071803",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23458,
            "identifier": "5545",
            "identifier_type": "int",
            "name": "PRB4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5545",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "proline-rich protein BstNI subfamily 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 23459,
            "identifier": "PC7_8833",
            "identifier_type": "str",
            "name": "Zinc efflux and compartmentalization by the SLC30 family",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 23495,
            "identifier": "GO:0050694",
            "identifier_type": "str",
            "name": "galactose 3-O-sulfotransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050694",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 23460,
            "identifier": "DB00762",
            "identifier_type": "str",
            "name": "Irinotecan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00762",
                "inchi": "InChI=1S/C33H38N4O6/c1-3-22-23-16-21(43-32(40)36-14-10-20(11-15-36)35-12-6-5-7-13-35)8-9-27(23)34-29-24(22)18-37-28(29)17-26-25(30(37)38)19-42-31(39)33(26,41)4-2/h8-9,16-17,20,41H,3-7,10-15,18-19H2,1-2H3/t33-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UWKQSNNFCGGAFS-XIFFEERXSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 23461,
            "identifier": "375341",
            "identifier_type": "int",
            "name": "C3orf62",
            "properties": {
                "url": "http://identifiers.org/ncbigene/375341",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "chromosome 3 open reading frame 62"
            },
            "metanode": "Gene"
        },
        {
            "id": 23462,
            "identifier": "23640",
            "identifier_type": "int",
            "name": "HSPBP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23640",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 23463,
            "identifier": "GO:1904415",
            "identifier_type": "str",
            "name": "regulation of xenophagy",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904415",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 23464,
            "identifier": "53940",
            "identifier_type": "int",
            "name": "FTHL17",
            "properties": {
                "url": "http://identifiers.org/ncbigene/53940",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "ferritin, heavy polypeptide-like 17"
            },
            "metanode": "Gene"
        },
        {
            "id": 23465,
            "identifier": "GO:0000784",
            "identifier_type": "str",
            "name": "nuclear chromosome, telomeric region",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000784",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 23466,
            "identifier": "GO:1904528",
            "identifier_type": "str",
            "name": "positive regulation of microtubule binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904528",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}