Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=2350

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2375",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2325",
    "results": [
        {
            "id": 2340,
            "identifier": "GO:0051497",
            "identifier_type": "str",
            "name": "negative regulation of stress fiber assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051497",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2341,
            "identifier": "10248",
            "identifier_type": "int",
            "name": "POP7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10248",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 2342,
            "identifier": "90826",
            "identifier_type": "int",
            "name": "PRMT9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/90826",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "protein arginine methyltransferase 9"
            },
            "metanode": "Gene"
        },
        {
            "id": 2343,
            "identifier": "DB00648",
            "identifier_type": "str",
            "name": "Mitotane",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00648",
                "inchi": "InChI=1S/C14H10Cl4/c15-10-7-5-9(6-8-10)13(14(17)18)11-3-1-2-4-12(11)16/h1-8,13-14H",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JWBOIMRXGHLCPP-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 2344,
            "identifier": "C0007137",
            "identifier_type": "str",
            "name": "Squamous cell carcinoma",
            "properties": {
                "url": "http://identifiers.org/umls/C0007137",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2345,
            "identifier": "4210",
            "identifier_type": "int",
            "name": "MEFV",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4210",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "Mediterranean fever"
            },
            "metanode": "Gene"
        },
        {
            "id": 2346,
            "identifier": "GO:0034769",
            "identifier_type": "str",
            "name": "basement membrane disassembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034769",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2347,
            "identifier": "WP561_r72035",
            "identifier_type": "str",
            "name": "Heme Biosynthesis",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP561_r72035",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 2348,
            "identifier": "84532",
            "identifier_type": "int",
            "name": "ACSS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84532",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "acyl-CoA synthetase short-chain family member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 2349,
            "identifier": "GO:0052723",
            "identifier_type": "str",
            "name": "inositol hexakisphosphate 1-kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052723",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 2350,
            "identifier": "GO:0042799",
            "identifier_type": "str",
            "name": "histone methyltransferase activity (H4-K20 specific)",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042799",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 2351,
            "identifier": "DB00284",
            "identifier_type": "str",
            "name": "Acarbose",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00284",
                "inchi": "InChI=1S/C25H43NO18/c1-6-11(26-8-2-7(3-27)12(30)15(33)13(8)31)14(32)19(37)24(40-6)43-22-10(5-29)42-25(20(38)17(22)35)44-21-9(4-28)41-23(39)18(36)16(21)34/h2,6,8-39H,3-5H2,1H3/t6-,8+,9-,10-,11-,12+,13+,14+,15+,16-,17-,18-,19-,20-,21-,22-,23-,24-,25-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XUFXOAAUWZOOIT-JMPDRRIHSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 2352,
            "identifier": "196264",
            "identifier_type": "int",
            "name": "MPZL3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/196264",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "myelin protein zero-like 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 2353,
            "identifier": "C0002965",
            "identifier_type": "str",
            "name": "Angina unstable",
            "properties": {
                "url": "http://identifiers.org/umls/C0002965",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2354,
            "identifier": "202559",
            "identifier_type": "int",
            "name": "KHDRBS2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/202559",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "KH domain containing, RNA binding, signal transduction associated 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 2355,
            "identifier": "9874",
            "identifier_type": "int",
            "name": "TLK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9874",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "tousled-like kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 2356,
            "identifier": "C0016382",
            "identifier_type": "str",
            "name": "Flushing",
            "properties": {
                "url": "http://identifiers.org/umls/C0016382",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2357,
            "identifier": "GO:0018812",
            "identifier_type": "str",
            "name": "3-hydroxyacyl-CoA dehydratase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0018812",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 2358,
            "identifier": "GO:0009067",
            "identifier_type": "str",
            "name": "aspartate family amino acid biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009067",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2359,
            "identifier": "DB00446",
            "identifier_type": "str",
            "name": "Chloramphenicol",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00446",
                "inchi": "InChI=1S/C11H12Cl2N2O5/c12-10(13)11(18)14-8(5-16)9(17)6-1-3-7(4-2-6)15(19)20/h1-4,8-10,16-17H,5H2,(H,14,18)/t8-,9-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WIIZWVCIJKGZOK-RKDXNWHRSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 2360,
            "identifier": "C2364111",
            "identifier_type": "str",
            "name": "Ageusia",
            "properties": {
                "url": "http://identifiers.org/umls/C2364111",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2361,
            "identifier": "3836",
            "identifier_type": "int",
            "name": "KPNA1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3836",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "karyopherin alpha 1 (importin alpha 5)"
            },
            "metanode": "Gene"
        },
        {
            "id": 2362,
            "identifier": "GO:0045860",
            "identifier_type": "str",
            "name": "positive regulation of protein kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045860",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2363,
            "identifier": "C0006285",
            "identifier_type": "str",
            "name": "Bronchopneumonia",
            "properties": {
                "url": "http://identifiers.org/umls/C0006285",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2364,
            "identifier": "GO:0044335",
            "identifier_type": "str",
            "name": "canonical Wnt signaling pathway involved in neural crest cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044335",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}