Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=24725

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=24750",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=24700",
    "results": [
        {
            "id": 24719,
            "identifier": "GO:0006563",
            "identifier_type": "str",
            "name": "L-serine metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006563",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 24720,
            "identifier": "5573",
            "identifier_type": "int",
            "name": "PRKAR1A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5573",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "protein kinase, cAMP-dependent, regulatory, type I, alpha"
            },
            "metanode": "Gene"
        },
        {
            "id": 24721,
            "identifier": "145264",
            "identifier_type": "int",
            "name": "SERPINA12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/145264",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12"
            },
            "metanode": "Gene"
        },
        {
            "id": 24722,
            "identifier": "51371",
            "identifier_type": "int",
            "name": "POMP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51371",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "proteasome maturation protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 24723,
            "identifier": "166929",
            "identifier_type": "int",
            "name": "SGMS2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/166929",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "sphingomyelin synthase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 24724,
            "identifier": "C0024902",
            "identifier_type": "str",
            "name": "Breast pain",
            "properties": {
                "url": "http://identifiers.org/umls/C0024902",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 24725,
            "identifier": "DB08907",
            "identifier_type": "str",
            "name": "Canagliflozin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08907",
                "inchi": "InChI=1S/C24H25FO5S/c1-13-2-3-15(24-23(29)22(28)21(27)19(12-26)30-24)10-16(13)11-18-8-9-20(31-18)14-4-6-17(25)7-5-14/h2-10,19,21-24,26-29H,11-12H2,1H3/t19-,21-,22+,23-,24+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XTNGUQKDFGDXSJ-ZXGKGEBGSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 24726,
            "identifier": "GO:0060119",
            "identifier_type": "str",
            "name": "inner ear receptor cell development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060119",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 24727,
            "identifier": "GO:0072136",
            "identifier_type": "str",
            "name": "metanephric mesenchymal cell proliferation involved in metanephros development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072136",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 24728,
            "identifier": "C0014553",
            "identifier_type": "str",
            "name": "Petit mal epilepsy",
            "properties": {
                "url": "http://identifiers.org/umls/C0014553",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 24729,
            "identifier": "114792",
            "identifier_type": "int",
            "name": "KLHL32",
            "properties": {
                "url": "http://identifiers.org/ncbigene/114792",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "kelch-like family member 32"
            },
            "metanode": "Gene"
        },
        {
            "id": 24730,
            "identifier": "6399",
            "identifier_type": "int",
            "name": "TRAPPC2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6399",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "trafficking protein particle complex 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 24731,
            "identifier": "GO:0021563",
            "identifier_type": "str",
            "name": "glossopharyngeal nerve development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021563",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 24732,
            "identifier": "PC7_5996",
            "identifier_type": "str",
            "name": "Nucleotide-like (purinergic) receptors",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 24733,
            "identifier": "GO:0072354",
            "identifier_type": "str",
            "name": "histone kinase activity (H3-T3 specific)",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072354",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 24734,
            "identifier": "GO:0019904",
            "identifier_type": "str",
            "name": "protein domain specific binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019904",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 24735,
            "identifier": "PC7_1521",
            "identifier_type": "str",
            "name": "Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 24736,
            "identifier": "256824",
            "identifier_type": "int",
            "name": "LOC256824",
            "properties": {
                "url": "http://identifiers.org/ncbigene/256824",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "cryptic gene"
            },
            "metanode": "Gene"
        },
        {
            "id": 24737,
            "identifier": "GO:0010911",
            "identifier_type": "str",
            "name": "regulation of isomerase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010911",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 24738,
            "identifier": "1103",
            "identifier_type": "int",
            "name": "CHAT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1103",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "choline O-acetyltransferase"
            },
            "metanode": "Gene"
        },
        {
            "id": 24739,
            "identifier": "9722",
            "identifier_type": "int",
            "name": "NOS1AP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9722",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "nitric oxide synthase 1 (neuronal) adaptor protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 24740,
            "identifier": "729020",
            "identifier_type": "int",
            "name": "RPEL1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/729020",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "ribulose-5-phosphate-3-epimerase-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 24741,
            "identifier": "DB08810",
            "identifier_type": "str",
            "name": "Cinitapride",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08810",
                "inchi": "InChI=1S/C21H30N4O4/c1-2-29-20-13-18(22)19(25(27)28)12-17(20)21(26)23-16-8-10-24(11-9-16)14-15-6-4-3-5-7-15/h3-4,12-13,15-16H,2,5-11,14,22H2,1H3,(H,23,26)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZDLBNXXKDMLZMF-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 24742,
            "identifier": "GO:0010951",
            "identifier_type": "str",
            "name": "negative regulation of endopeptidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010951",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 24743,
            "identifier": "3556",
            "identifier_type": "int",
            "name": "IL1RAP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3556",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "interleukin 1 receptor accessory protein"
            },
            "metanode": "Gene"
        }
    ]
}