Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=250
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=275", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=225", "results": [ { "id": 249, "identifier": "1655", "identifier_type": "int", "name": "DDX5", "properties": { "url": "http://identifiers.org/ncbigene/1655", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "DEAD (Asp-Glu-Ala-Asp) box helicase 5" }, "metanode": "Gene" }, { "id": 250, "identifier": "GO:0034418", "identifier_type": "str", "name": "urate biosynthetic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0034418", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 252, "identifier": "DB00833", "identifier_type": "str", "name": "Cefaclor", "properties": { "url": "http://www.drugbank.ca/drugs/DB00833", "inchi": "InChI=1S/C15H14ClN3O4S/c16-8-6-24-14-10(13(21)19(14)11(8)15(22)23)18-12(20)9(17)7-4-2-1-3-5-7/h1-5,9-10,14H,6,17H2,(H,18,20)(H,22,23)/t9-,10-,14-/m1/s1", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=QYIYFLOTGYLRGG-GPCCPHFNSA-N" }, "metanode": "Compound" }, { "id": 253, "identifier": "C0016508", "identifier_type": "str", "name": "Congenital foot malformation", "properties": { "url": "http://identifiers.org/umls/C0016508", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 254, "identifier": "GO:0009838", "identifier_type": "str", "name": "abscission", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0009838", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 255, "identifier": "646627", "identifier_type": "int", "name": "LYPD8", "properties": { "url": "http://identifiers.org/ncbigene/646627", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "LY6/PLAUR domain containing 8" }, "metanode": "Gene" }, { "id": 256, "identifier": "GO:0070666", "identifier_type": "str", "name": "regulation of mast cell proliferation", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0070666", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 257, "identifier": "24148", "identifier_type": "int", "name": "PRPF6", "properties": { "url": "http://identifiers.org/ncbigene/24148", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "20", "description": "pre-mRNA processing factor 6" }, "metanode": "Gene" }, { "id": 258, "identifier": "GO:2000043", "identifier_type": "str", "name": "regulation of cardiac cell fate specification", "properties": { "url": "http://purl.obolibrary.org/obo/GO_2000043", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 259, "identifier": "144245", "identifier_type": "int", "name": "ALG10B", "properties": { "url": "http://identifiers.org/ncbigene/144245", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "ALG10B, alpha-1,2-glucosyltransferase" }, "metanode": "Gene" }, { "id": 260, "identifier": "54432", "identifier_type": "int", "name": "YIPF1", "properties": { "url": "http://identifiers.org/ncbigene/54432", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "Yip1 domain family, member 1" }, "metanode": "Gene" }, { "id": 261, "identifier": "GO:0019730", "identifier_type": "str", "name": "antimicrobial humoral response", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0019730", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 262, "identifier": "84988", "identifier_type": "int", "name": "PPP1R16A", "properties": { "url": "http://identifiers.org/ncbigene/84988", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "8", "description": "protein phosphatase 1, regulatory subunit 16A" }, "metanode": "Gene" }, { "id": 263, "identifier": "C1994994", "identifier_type": "str", "name": "Excessive thirst", "properties": { "url": "http://identifiers.org/umls/C1994994", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 264, "identifier": "7007", "identifier_type": "int", "name": "TECTA", "properties": { "url": "http://identifiers.org/ncbigene/7007", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "11", "description": "tectorin alpha" }, "metanode": "Gene" }, { "id": 265, "identifier": "GO:0035877", "identifier_type": "str", "name": "death effector domain binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0035877", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 266, "identifier": "GO:0036003", "identifier_type": "str", "name": "positive regulation of transcription from RNA polymerase II promoter in response to stress", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0036003", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 267, "identifier": "25844", "identifier_type": "int", "name": "YIPF3", "properties": { "url": "http://identifiers.org/ncbigene/25844", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "6", "description": "Yip1 domain family, member 3" }, "metanode": "Gene" }, { "id": 268, "identifier": "1583", "identifier_type": "int", "name": "CYP11A1", "properties": { "url": "http://identifiers.org/ncbigene/1583", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "15", "description": "cytochrome P450, family 11, subfamily A, polypeptide 1" }, "metanode": "Gene" }, { "id": 269, "identifier": "DB00748", "identifier_type": "str", "name": "Carbinoxamine", "properties": { "url": "http://www.drugbank.ca/drugs/DB00748", "inchi": "InChI=1S/C16H19ClN2O/c1-19(2)11-12-20-16(15-5-3-4-10-18-15)13-6-8-14(17)9-7-13/h3-10,16H,11-12H2,1-2H3", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=OJFSXZCBGQGRNV-UHFFFAOYSA-N" }, "metanode": "Compound" }, { "id": 270, "identifier": "PC7_5537", "identifier_type": "str", "name": "Molecules associated with elastic fibres", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 271, "identifier": "89782", "identifier_type": "int", "name": "LMLN", "properties": { "url": "http://identifiers.org/ncbigene/89782", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "3", "description": "leishmanolysin-like (metallopeptidase M8 family)" }, "metanode": "Gene" }, { "id": 272, "identifier": "105379645", "identifier_type": "int", "name": "LOC105379645", "properties": { "url": "http://identifiers.org/ncbigene/105379645", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "killer cell immunoglobulin-like receptor 2DL2" }, "metanode": "Gene" }, { "id": 273, "identifier": "8703", "identifier_type": "int", "name": "B4GALT3", "properties": { "url": "http://identifiers.org/ncbigene/8703", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3" }, "metanode": "Gene" }, { "id": 274, "identifier": "GO:2000386", "identifier_type": "str", "name": "positive regulation of ovarian follicle development", "properties": { "url": "http://purl.obolibrary.org/obo/GO_2000386", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" } ] }{ "count": 47031, "next": "