Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=2500

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2525",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=2475",
    "results": [
        {
            "id": 2488,
            "identifier": "201501",
            "identifier_type": "int",
            "name": "ZBTB7C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/201501",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "zinc finger and BTB domain containing 7C"
            },
            "metanode": "Gene"
        },
        {
            "id": 2489,
            "identifier": "79176",
            "identifier_type": "int",
            "name": "FBXL15",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79176",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "F-box and leucine-rich repeat protein 15"
            },
            "metanode": "Gene"
        },
        {
            "id": 2490,
            "identifier": "325",
            "identifier_type": "int",
            "name": "APCS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/325",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "amyloid P component, serum"
            },
            "metanode": "Gene"
        },
        {
            "id": 2491,
            "identifier": "GO:0055091",
            "identifier_type": "str",
            "name": "phospholipid homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0055091",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2492,
            "identifier": "GO:2000698",
            "identifier_type": "str",
            "name": "positive regulation of epithelial cell differentiation involved in kidney development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000698",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2493,
            "identifier": "GO:0018026",
            "identifier_type": "str",
            "name": "peptidyl-lysine monomethylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0018026",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2494,
            "identifier": "PC7_5329",
            "identifier_type": "str",
            "name": "Metabolism of polyamines",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 2495,
            "identifier": "284532",
            "identifier_type": "int",
            "name": "OR14A16",
            "properties": {
                "url": "http://identifiers.org/ncbigene/284532",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "olfactory receptor, family 14, subfamily A, member 16"
            },
            "metanode": "Gene"
        },
        {
            "id": 2496,
            "identifier": "2778",
            "identifier_type": "int",
            "name": "GNAS",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2778",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "GNAS complex locus"
            },
            "metanode": "Gene"
        },
        {
            "id": 2497,
            "identifier": "11285",
            "identifier_type": "int",
            "name": "B4GALT7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11285",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 38719,
            "identifier": "PC7_3632",
            "identifier_type": "str",
            "name": "Effects of Botulinum toxin",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 2498,
            "identifier": "N0000007196",
            "identifier_type": "str",
            "name": "Iodine",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000007196",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Chemical/Ingredient"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 2499,
            "identifier": "DB00892",
            "identifier_type": "str",
            "name": "Oxybuprocaine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00892",
                "inchi": "InChI=1S/C17H28N2O3/c1-4-7-11-21-16-13-14(8-9-15(16)18)17(20)22-12-10-19(5-2)6-3/h8-9,13H,4-7,10-12,18H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=CMHHMUWAYWTMGS-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 2500,
            "identifier": "GO:0070663",
            "identifier_type": "str",
            "name": "regulation of leukocyte proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070663",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2501,
            "identifier": "136319",
            "identifier_type": "int",
            "name": "MTPN",
            "properties": {
                "url": "http://identifiers.org/ncbigene/136319",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "myotrophin"
            },
            "metanode": "Gene"
        },
        {
            "id": 2502,
            "identifier": "55269",
            "identifier_type": "int",
            "name": "PSPC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55269",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "paraspeckle component 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 2503,
            "identifier": "DB06810",
            "identifier_type": "str",
            "name": "Plicamycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06810",
                "inchi": "InChI=1S/C52H76O24/c1-18-29(72-34-14-30(43(58)21(4)68-34)73-33-13-28(54)42(57)20(3)67-33)12-26-10-25-11-27(49(66-9)48(63)41(56)19(2)53)50(47(62)39(25)46(61)38(26)40(18)55)76-36-16-31(44(59)23(6)70-36)74-35-15-32(45(60)22(5)69-35)75-37-17-52(8,65)51(64)24(7)71-37/h10,12,19-24,27-28,30-37,41-45,49-51,53-61,64-65H,11,13-17H2,1-9H3/t19-,20-,21-,22-,23-,24-,27+,28-,30-,31-,32-,33+,34+,35+,36+,37+,41+,42-,43-,44-,45+,49+,50+,51-,52+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=CFCUWKMKBJTWLW-BKHRDMLASA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 2504,
            "identifier": "GO:2000767",
            "identifier_type": "str",
            "name": "positive regulation of cytoplasmic translation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000767",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2505,
            "identifier": "GO:1901223",
            "identifier_type": "str",
            "name": "negative regulation of NIK/NF-kappaB signaling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901223",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 2506,
            "identifier": "C0022504",
            "identifier_type": "str",
            "name": "Kaposi's varicelliform eruption",
            "properties": {
                "url": "http://identifiers.org/umls/C0022504",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 2507,
            "identifier": "100170841",
            "identifier_type": "int",
            "name": "C17orf96",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100170841",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "chromosome 17 open reading frame 96"
            },
            "metanode": "Gene"
        },
        {
            "id": 2508,
            "identifier": "7572",
            "identifier_type": "int",
            "name": "ZNF24",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7572",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "zinc finger protein 24"
            },
            "metanode": "Gene"
        },
        {
            "id": 2509,
            "identifier": "147407",
            "identifier_type": "int",
            "name": "SLC25A52",
            "properties": {
                "url": "http://identifiers.org/ncbigene/147407",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "solute carrier family 25, member 52"
            },
            "metanode": "Gene"
        },
        {
            "id": 2510,
            "identifier": "N0000006290",
            "identifier_type": "str",
            "name": "Vitamin K",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000006290",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Chemical/Ingredient"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 2511,
            "identifier": "100463285",
            "identifier_type": "int",
            "name": "MTRNR2L4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100463285",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "MT-RNR2-like 4"
            },
            "metanode": "Gene"
        }
    ]
}