Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=25225

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25250",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25200",
    "results": [
        {
            "id": 25218,
            "identifier": "22897",
            "identifier_type": "int",
            "name": "CEP164",
            "properties": {
                "url": "http://identifiers.org/ncbigene/22897",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "centrosomal protein 164kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 25219,
            "identifier": "7399",
            "identifier_type": "int",
            "name": "USH2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7399",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "Usher syndrome 2A (autosomal recessive, mild)"
            },
            "metanode": "Gene"
        },
        {
            "id": 25220,
            "identifier": "GO:0006481",
            "identifier_type": "str",
            "name": "C-terminal protein methylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006481",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25221,
            "identifier": "GO:0032915",
            "identifier_type": "str",
            "name": "positive regulation of transforming growth factor beta2 production",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032915",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25222,
            "identifier": "GO:0043587",
            "identifier_type": "str",
            "name": "tongue morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043587",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25223,
            "identifier": "DB08890",
            "identifier_type": "str",
            "name": "Linaclotide",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08890",
                "inchi": "InChI=1S/C59H79N15O21S6/c1-26-47(82)69-41-25-101-99-22-38-52(87)65-33(13-14-45(80)81)49(84)66-34(16-28-5-9-30(76)10-6-28)50(85)71-40(54(89)72-39(23-97-96-20-32(60)48(83)70-38)53(88)67-35(18-43(61)78)58(93)74-15-3-4-42(74)56(91)63-26)24-100-98-21-37(64-44(79)19-62-57(92)46(27(2)75)73-55(41)90)51(86)68-36(59(94)95)17-29-7-11-31(77)12-8-29/h5-12,26-27,32-42,46,75-77H,3-4,13-25,60H2,1-2H3,(H2,61,78)(H,62,92)(H,63,91)(H,64,79)(H,65,87)(H,66,84)(H,67,88)(H,68,86)(H,69,82)(H,70,83)(H,71,85)(H,72,89)(H,73,90)(H,80,81)(H,94,95)/t26-,27+,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,46-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=KXGCNMMJRFDFNR-WDRJZQOASA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25224,
            "identifier": "C1261989",
            "identifier_type": "str",
            "name": "Hepatic enzyme decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C1261989",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25225,
            "identifier": "1975",
            "identifier_type": "int",
            "name": "EIF4B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1975",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "eukaryotic translation initiation factor 4B"
            },
            "metanode": "Gene"
        },
        {
            "id": 25226,
            "identifier": "55778",
            "identifier_type": "int",
            "name": "ZNF839",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55778",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "zinc finger protein 839"
            },
            "metanode": "Gene"
        },
        {
            "id": 25227,
            "identifier": "64285",
            "identifier_type": "int",
            "name": "RHBDF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64285",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "rhomboid 5 homolog 1 (Drosophila)"
            },
            "metanode": "Gene"
        },
        {
            "id": 25228,
            "identifier": "120586",
            "identifier_type": "int",
            "name": "OR8I2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/120586",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "olfactory receptor, family 8, subfamily I, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 25229,
            "identifier": "80204",
            "identifier_type": "int",
            "name": "FBXO11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80204",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "F-box protein 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 25230,
            "identifier": "DB00778",
            "identifier_type": "str",
            "name": "Roxithromycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00778",
                "inchi": "InChI=1S/C41H76N2O15/c1-15-29-41(10,49)34(45)24(4)31(42-53-21-52-17-16-50-13)22(2)19-39(8,48)36(58-38-32(44)28(43(11)12)18-23(3)54-38)25(5)33(26(6)37(47)56-29)57-30-20-40(9,51-14)35(46)27(7)55-30/h22-30,32-36,38,44-46,48-49H,15-21H2,1-14H3/b42-31+/t22-,23-,24+,25+,26-,27+,28+,29-,30+,32-,33+,34-,35+,36-,38+,39-,40-,41-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RXZBMPWDPOLZGW-XMRMVWPWSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25231,
            "identifier": "460",
            "identifier_type": "int",
            "name": "ASTN1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/460",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "astrotactin 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25232,
            "identifier": "C0149892",
            "identifier_type": "str",
            "name": "Gingival abscess",
            "properties": {
                "url": "http://identifiers.org/umls/C0149892",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25233,
            "identifier": "GO:0004348",
            "identifier_type": "str",
            "name": "glucosylceramidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004348",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 25234,
            "identifier": "C0232459",
            "identifier_type": "str",
            "name": "Digestion impaired",
            "properties": {
                "url": "http://identifiers.org/umls/C0232459",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25235,
            "identifier": "57561",
            "identifier_type": "int",
            "name": "ARRDC3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57561",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "arrestin domain containing 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 25236,
            "identifier": "2913",
            "identifier_type": "int",
            "name": "GRM3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2913",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "glutamate receptor, metabotropic 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 25237,
            "identifier": "404636",
            "identifier_type": "int",
            "name": "FAM45A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/404636",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "family with sequence similarity 45, member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 25238,
            "identifier": "C0694536",
            "identifier_type": "str",
            "name": "Drug seeking behavior",
            "properties": {
                "url": "http://identifiers.org/umls/C0694536",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25239,
            "identifier": "GO:0034620",
            "identifier_type": "str",
            "name": "cellular response to unfolded protein",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034620",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25240,
            "identifier": "7782",
            "identifier_type": "int",
            "name": "SLC30A4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7782",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "solute carrier family 30 (zinc transporter), member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 25241,
            "identifier": "654463",
            "identifier_type": "int",
            "name": "FER1L6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/654463",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "fer-1-like family member 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 25242,
            "identifier": "100507050",
            "identifier_type": "int",
            "name": "TPBGL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100507050",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "trophoblast glycoprotein-like"
            },
            "metanode": "Gene"
        }
    ]
}