Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=25300

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25325",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25275",
    "results": [
        {
            "id": 25293,
            "identifier": "GO:0007599",
            "identifier_type": "str",
            "name": "hemostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007599",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25294,
            "identifier": "GO:2000537",
            "identifier_type": "str",
            "name": "regulation of B cell chemotaxis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000537",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25295,
            "identifier": "4499",
            "identifier_type": "int",
            "name": "MT1M",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4499",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "metallothionein 1M"
            },
            "metanode": "Gene"
        },
        {
            "id": 25296,
            "identifier": "DB00320",
            "identifier_type": "str",
            "name": "Dihydroergotamine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00320",
                "inchi": "InChI=1S/C33H37N5O5/c1-32(35-29(39)21-15-23-22-10-6-11-24-28(22)20(17-34-24)16-25(23)36(2)18-21)31(41)38-26(14-19-8-4-3-5-9-19)30(40)37-13-7-12-27(37)33(38,42)43-32/h3-6,8-11,17,21,23,25-27,34,42H,7,12-16,18H2,1-2H3,(H,35,39)/t21-,23-,25-,26+,27+,32-,33+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LUZRJRNZXALNLM-JGRZULCMSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25297,
            "identifier": "GO:1904232",
            "identifier_type": "str",
            "name": "regulation of aconitate hydratase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1904232",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25298,
            "identifier": "DB00786",
            "identifier_type": "str",
            "name": "Marimastat",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00786",
                "inchi": "InChI=1S/C15H29N3O5/c1-8(2)7-9(10(19)13(21)18-23)12(20)17-11(14(22)16-6)15(3,4)5/h8-11,19,23H,7H2,1-6H3,(H,16,22)(H,17,20)(H,18,21)/t9-,10+,11-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OCSMOTCMPXTDND-OUAUKWLOSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25299,
            "identifier": "GO:0090022",
            "identifier_type": "str",
            "name": "regulation of neutrophil chemotaxis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090022",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25300,
            "identifier": "56990",
            "identifier_type": "int",
            "name": "CDC42SE2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56990",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "CDC42 small effector 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 25301,
            "identifier": "D012912",
            "identifier_type": "str",
            "name": "Sneezing",
            "properties": {
                "url": "http://identifiers.org/mesh/D012912",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 25302,
            "identifier": "3098",
            "identifier_type": "int",
            "name": "HK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3098",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "hexokinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25303,
            "identifier": "GO:0050820",
            "identifier_type": "str",
            "name": "positive regulation of coagulation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050820",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25304,
            "identifier": "55347",
            "identifier_type": "int",
            "name": "ABHD10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55347",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "abhydrolase domain containing 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 25305,
            "identifier": "64110",
            "identifier_type": "int",
            "name": "MAGEF1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64110",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "melanoma antigen family F1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25306,
            "identifier": "5609",
            "identifier_type": "int",
            "name": "MAP2K7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5609",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "mitogen-activated protein kinase kinase 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 25307,
            "identifier": "105379734",
            "identifier_type": "int",
            "name": "LOC105379734",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105379734",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "uncharacterized LOC105379734"
            },
            "metanode": "Gene"
        },
        {
            "id": 25308,
            "identifier": "29",
            "identifier_type": "int",
            "name": "ABR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/29",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "active BCR-related"
            },
            "metanode": "Gene"
        },
        {
            "id": 25309,
            "identifier": "401992",
            "identifier_type": "int",
            "name": "OR2T2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/401992",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "olfactory receptor, family 2, subfamily T, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 25310,
            "identifier": "GO:0006476",
            "identifier_type": "str",
            "name": "protein deacetylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006476",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25819,
            "identifier": "C0580493",
            "identifier_type": "str",
            "name": "Serum albumin decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C0580493",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25311,
            "identifier": "11245",
            "identifier_type": "int",
            "name": "GPR176",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11245",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "G protein-coupled receptor 176"
            },
            "metanode": "Gene"
        },
        {
            "id": 25312,
            "identifier": "C0018946",
            "identifier_type": "str",
            "name": "Subdural haematoma",
            "properties": {
                "url": "http://identifiers.org/umls/C0018946",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25313,
            "identifier": "DB01626",
            "identifier_type": "str",
            "name": "Pargyline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01626",
                "inchi": "InChI=1S/C11H13N/c1-3-9-12(2)10-11-7-5-4-6-8-11/h1,4-8H,9-10H2,2H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=DPWPWRLQFGFJFI-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25314,
            "identifier": "151649",
            "identifier_type": "int",
            "name": "PP2D1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/151649",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "protein phosphatase 2C-like domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25315,
            "identifier": "5079",
            "identifier_type": "int",
            "name": "PAX5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5079",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "paired box 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 25316,
            "identifier": "GO:0045585",
            "identifier_type": "str",
            "name": "positive regulation of cytotoxic T cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045585",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}