Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=25900

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25925",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25875",
    "results": [
        {
            "id": 25892,
            "identifier": "GO:0045840",
            "identifier_type": "str",
            "name": "positive regulation of mitotic nuclear division",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045840",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25893,
            "identifier": "65243",
            "identifier_type": "int",
            "name": "ZFP69B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/65243",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ZFP69 zinc finger protein B"
            },
            "metanode": "Gene"
        },
        {
            "id": 25894,
            "identifier": "PC7_3958",
            "identifier_type": "str",
            "name": "Formation of Fibrin Clot (Clotting Cascade)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 25895,
            "identifier": "GO:0033622",
            "identifier_type": "str",
            "name": "integrin activation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0033622",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25896,
            "identifier": "GO:0045876",
            "identifier_type": "str",
            "name": "positive regulation of sister chromatid cohesion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045876",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25897,
            "identifier": "GO:0042987",
            "identifier_type": "str",
            "name": "amyloid precursor protein catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042987",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25898,
            "identifier": "GO:1901984",
            "identifier_type": "str",
            "name": "negative regulation of protein acetylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901984",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25899,
            "identifier": "9925",
            "identifier_type": "int",
            "name": "ZBTB5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9925",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "zinc finger and BTB domain containing 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 25900,
            "identifier": "C0013592",
            "identifier_type": "str",
            "name": "Ectropion",
            "properties": {
                "url": "http://identifiers.org/umls/C0013592",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25901,
            "identifier": "GO:1903078",
            "identifier_type": "str",
            "name": "positive regulation of protein localization to plasma membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1903078",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25902,
            "identifier": "128408",
            "identifier_type": "int",
            "name": "BHLHE23",
            "properties": {
                "url": "http://identifiers.org/ncbigene/128408",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "basic helix-loop-helix family, member e23"
            },
            "metanode": "Gene"
        },
        {
            "id": 25903,
            "identifier": "100505555",
            "identifier_type": "int",
            "name": "LOC100505555",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100505555",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "uncharacterized LOC100505555"
            },
            "metanode": "Gene"
        },
        {
            "id": 25904,
            "identifier": "DB01263",
            "identifier_type": "str",
            "name": "Posaconazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01263",
                "inchi": "InChI=1S/C37H42F2N8O4/c1-3-35(26(2)48)47-36(49)46(25-42-47)31-7-5-29(6-8-31)43-14-16-44(17-15-43)30-9-11-32(12-10-30)50-20-27-19-37(51-21-27,22-45-24-40-23-41-45)33-13-4-28(38)18-34(33)39/h4-13,18,23-27,35,48H,3,14-17,19-22H2,1-2H3/t26-,27?,35-,37-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RAGOYPUPXAKGKH-AGDNISCASA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25905,
            "identifier": "3631",
            "identifier_type": "int",
            "name": "INPP4A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3631",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "inositol polyphosphate-4-phosphatase, type I, 107kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 25906,
            "identifier": "401498",
            "identifier_type": "int",
            "name": "TMEM215",
            "properties": {
                "url": "http://identifiers.org/ncbigene/401498",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "transmembrane protein 215"
            },
            "metanode": "Gene"
        },
        {
            "id": 25907,
            "identifier": "C0855335",
            "identifier_type": "str",
            "name": "Electrocardiogram ST segment abnormal",
            "properties": {
                "url": "http://identifiers.org/umls/C0855335",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25908,
            "identifier": "253314",
            "identifier_type": "int",
            "name": "EIF4E1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/253314",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "eukaryotic translation initiation factor 4E family member 1B"
            },
            "metanode": "Gene"
        },
        {
            "id": 25909,
            "identifier": "C1527340",
            "identifier_type": "str",
            "name": "Voice disturbance",
            "properties": {
                "url": "http://identifiers.org/umls/C1527340",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25910,
            "identifier": "283870",
            "identifier_type": "int",
            "name": "BRICD5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/283870",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "BRICHOS domain containing 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 25911,
            "identifier": "2116",
            "identifier_type": "int",
            "name": "ETV2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2116",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "ets variant 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 25912,
            "identifier": "91057",
            "identifier_type": "int",
            "name": "CCDC34",
            "properties": {
                "url": "http://identifiers.org/ncbigene/91057",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "coiled-coil domain containing 34"
            },
            "metanode": "Gene"
        },
        {
            "id": 25913,
            "identifier": "GO:0021891",
            "identifier_type": "str",
            "name": "olfactory bulb interneuron development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021891",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25914,
            "identifier": "260434",
            "identifier_type": "int",
            "name": "PYDC1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/260434",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "PYD (pyrin domain) containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25915,
            "identifier": "GO:0031903",
            "identifier_type": "str",
            "name": "microbody membrane",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031903",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 25916,
            "identifier": "84891",
            "identifier_type": "int",
            "name": "ZSCAN10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84891",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "zinc finger and SCAN domain containing 10"
            },
            "metanode": "Gene"
        }
    ]
}