Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=25975

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=26000",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=25950",
    "results": [
        {
            "id": 25967,
            "identifier": "342372",
            "identifier_type": "int",
            "name": "PKD1L3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/342372",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "polycystic kidney disease 1-like 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 25968,
            "identifier": "105372319",
            "identifier_type": "int",
            "name": "LOC105372319",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105372319",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "putative zinc finger protein 56"
            },
            "metanode": "Gene"
        },
        {
            "id": 25969,
            "identifier": "5457",
            "identifier_type": "int",
            "name": "POU4F1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5457",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "POU class 4 homeobox 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25970,
            "identifier": "51399",
            "identifier_type": "int",
            "name": "TRAPPC4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51399",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "trafficking protein particle complex 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 25971,
            "identifier": "GO:0031936",
            "identifier_type": "str",
            "name": "negative regulation of chromatin silencing",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031936",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25972,
            "identifier": "GO:0030826",
            "identifier_type": "str",
            "name": "regulation of cGMP biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030826",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25973,
            "identifier": "285440",
            "identifier_type": "int",
            "name": "CYP4V2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/285440",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "cytochrome P450, family 4, subfamily V, polypeptide 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 25974,
            "identifier": "10413",
            "identifier_type": "int",
            "name": "YAP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10413",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "Yes-associated protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25975,
            "identifier": "GO:2000878",
            "identifier_type": "str",
            "name": "positive regulation of oligopeptide transport",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000878",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25976,
            "identifier": "DB00478",
            "identifier_type": "str",
            "name": "Rimantadine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00478",
                "inchi": "InChI=1S/C12H21N/c1-8(13)12-5-9-2-10(6-12)4-11(3-9)7-12/h8-11H,2-7,13H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=UBCHPRBFMUDMNC-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25977,
            "identifier": "GO:0004067",
            "identifier_type": "str",
            "name": "asparaginase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0004067",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 25978,
            "identifier": "100505841",
            "identifier_type": "int",
            "name": "LOC100505841",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100505841",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "zinc finger protein 474-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 25979,
            "identifier": "GO:0071680",
            "identifier_type": "str",
            "name": "response to indole-3-methanol",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071680",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 25980,
            "identifier": "102724728",
            "identifier_type": "int",
            "name": "LOC102724728",
            "properties": {
                "url": "http://identifiers.org/ncbigene/102724728",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "putative POM121-like protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 25981,
            "identifier": "DB00314",
            "identifier_type": "str",
            "name": "Capreomycin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00314",
                "inchi": "InChI=1S/C25H44N14O8.C25H44N14O7/c26-4-1-2-11(27)6-17(41)32-8-14-20(43)35-15(9-34-25(30)47)21(44)39-18(13-3-5-31-24(29)38-13)23(46)33-7-12(28)19(42)37-16(10-40)22(45)36-14;1-11-19(41)36-15(9-32-17(40)7-12(27)3-2-5-26)21(43)37-16(10-34-25(30)46)22(44)39-18(14-4-6-31-24(29)38-14)23(45)33-8-13(28)20(42)35-11/h9,11-14,16,18,40H,1-8,10,26-28H2,(H,32,41)(H,33,46)(H,35,43)(H,36,45)(H,37,42)(H,39,44)(H3,29,31,38)(H3,30,34,47);10-15,18H,2-9,26-28H2,1H3,(H,32,40)(H,33,45)(H,35,42)(H,36,41)(H,37,43)(H,39,44)(H3,29,31,38)(H3,30,34,46)/b15-9+;16-10+/t11-,12-,13+,14-,16-,18-;11-,12-,13-,14+,15-,18-/m00/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VCOPTHOUUNAYKQ-WBTCAYNUSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 25982,
            "identifier": "987",
            "identifier_type": "int",
            "name": "LRBA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/987",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "LPS-responsive vesicle trafficking, beach and anchor containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 25983,
            "identifier": "GO:0034597",
            "identifier_type": "str",
            "name": "phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034597",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 25984,
            "identifier": "GO:0044614",
            "identifier_type": "str",
            "name": "nuclear pore cytoplasmic filaments",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044614",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 25985,
            "identifier": "3440",
            "identifier_type": "int",
            "name": "IFNA2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3440",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "interferon, alpha 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 25986,
            "identifier": "C0232861",
            "identifier_type": "str",
            "name": "Penile discharge",
            "properties": {
                "url": "http://identifiers.org/umls/C0232861",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25987,
            "identifier": "105372883",
            "identifier_type": "int",
            "name": "LOC105372883",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105372883",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "uncharacterized LOC105372883"
            },
            "metanode": "Gene"
        },
        {
            "id": 25988,
            "identifier": "130574",
            "identifier_type": "int",
            "name": "LYPD6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/130574",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "LY6/PLAUR domain containing 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 25989,
            "identifier": "C0333271",
            "identifier_type": "str",
            "name": "Bloody discharge",
            "properties": {
                "url": "http://identifiers.org/umls/C0333271",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 25990,
            "identifier": "136853",
            "identifier_type": "int",
            "name": "SSC4D",
            "properties": {
                "url": "http://identifiers.org/ncbigene/136853",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "scavenger receptor cysteine rich family, 4 domains"
            },
            "metanode": "Gene"
        },
        {
            "id": 25991,
            "identifier": "10432",
            "identifier_type": "int",
            "name": "RBM14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10432",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "RNA binding motif protein 14"
            },
            "metanode": "Gene"
        }
    ]
}