Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=26400

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=26425",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=26375",
    "results": [
        {
            "id": 26394,
            "identifier": "57677",
            "identifier_type": "int",
            "name": "ZFP14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57677",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "ZFP14 zinc finger protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 26395,
            "identifier": "PC7_7263",
            "identifier_type": "str",
            "name": "SHC-mediated signalling",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 26396,
            "identifier": "5569",
            "identifier_type": "int",
            "name": "PKIA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5569",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "protein kinase (cAMP-dependent, catalytic) inhibitor alpha"
            },
            "metanode": "Gene"
        },
        {
            "id": 26397,
            "identifier": "GO:0043335",
            "identifier_type": "str",
            "name": "protein unfolding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043335",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26398,
            "identifier": "D020233",
            "identifier_type": "str",
            "name": "Gait Disorders, Neurologic",
            "properties": {
                "url": "http://identifiers.org/mesh/D020233",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 26399,
            "identifier": "PC7_6563",
            "identifier_type": "str",
            "name": "Pre-NOTCH Processing in the Endoplasmic Reticulum",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 26400,
            "identifier": "DB08995",
            "identifier_type": "str",
            "name": "Diosmin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08995",
                "inchi": "InChI=1/C28H32O15/c1-10-21(32)23(34)25(36)27(40-10)39-9-19-22(33)24(35)26(37)28(43-19)41-12-6-14(30)20-15(31)8-17(42-18(20)7-12)11-3-4-16(38-2)13(29)5-11/h3-8,10,19,21-30,32-37H,9H2,1-2H3/t10-,19+,21-,22+,23+,24-,25+,26+,27+,28+/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=GZSOSUNBTXMUFQ-DSPCJXANNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 26401,
            "identifier": "116447",
            "identifier_type": "int",
            "name": "TOP1MT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/116447",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "topoisomerase (DNA) I, mitochondrial"
            },
            "metanode": "Gene"
        },
        {
            "id": 26402,
            "identifier": "23536",
            "identifier_type": "int",
            "name": "ADAT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23536",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "adenosine deaminase, tRNA-specific 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 26403,
            "identifier": "163115",
            "identifier_type": "int",
            "name": "ZNF781",
            "properties": {
                "url": "http://identifiers.org/ncbigene/163115",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 781"
            },
            "metanode": "Gene"
        },
        {
            "id": 26404,
            "identifier": "8038",
            "identifier_type": "int",
            "name": "ADAM12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8038",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "ADAM metallopeptidase domain 12"
            },
            "metanode": "Gene"
        },
        {
            "id": 26405,
            "identifier": "84248",
            "identifier_type": "int",
            "name": "FYTTD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84248",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "forty-two-three domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 26406,
            "identifier": "GO:0090526",
            "identifier_type": "str",
            "name": "regulation of gluconeogenesis involved in cellular glucose homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0090526",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26407,
            "identifier": "C0276252",
            "identifier_type": "str",
            "name": "Cytomegalovirus hepatitis",
            "properties": {
                "url": "http://identifiers.org/umls/C0276252",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 26408,
            "identifier": "C0236826",
            "identifier_type": "str",
            "name": "Expressive language disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0236826",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 26409,
            "identifier": "PC7_4490",
            "identifier_type": "str",
            "name": "Hormone ligand-binding receptors",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 26410,
            "identifier": "64924",
            "identifier_type": "int",
            "name": "SLC30A5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64924",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "solute carrier family 30 (zinc transporter), member 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 26411,
            "identifier": "100996643",
            "identifier_type": "int",
            "name": "LOC100996643",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100996643",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "monofunctional C1-tetrahydrofolate synthase, mitochondrial-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 26412,
            "identifier": "65999",
            "identifier_type": "int",
            "name": "LRRC61",
            "properties": {
                "url": "http://identifiers.org/ncbigene/65999",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "leucine rich repeat containing 61"
            },
            "metanode": "Gene"
        },
        {
            "id": 26413,
            "identifier": "GO:0034123",
            "identifier_type": "str",
            "name": "positive regulation of toll-like receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0034123",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26414,
            "identifier": "N0000175967",
            "identifier_type": "str",
            "name": "Thrombopoietin Receptor Interactions",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000175967",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 26415,
            "identifier": "GO:0000151",
            "identifier_type": "str",
            "name": "ubiquitin ligase complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000151",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 26416,
            "identifier": "3552",
            "identifier_type": "int",
            "name": "IL1A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3552",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "interleukin 1, alpha"
            },
            "metanode": "Gene"
        },
        {
            "id": 26417,
            "identifier": "GO:0045073",
            "identifier_type": "str",
            "name": "regulation of chemokine biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045073",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26418,
            "identifier": "C0455899",
            "identifier_type": "str",
            "name": "Pharyngeal erythema",
            "properties": {
                "url": "http://identifiers.org/umls/C0455899",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        }
    ]
}