Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=26750

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=26775",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=26725",
    "results": [
        {
            "id": 26744,
            "identifier": "GO:0043932",
            "identifier_type": "str",
            "name": "ossification involved in bone remodeling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043932",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26745,
            "identifier": "56704",
            "identifier_type": "int",
            "name": "JPH1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56704",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "junctophilin 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 26746,
            "identifier": "C0948284",
            "identifier_type": "str",
            "name": "Corneal decompensation",
            "properties": {
                "url": "http://identifiers.org/umls/C0948284",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 26747,
            "identifier": "GO:0030578",
            "identifier_type": "str",
            "name": "PML body organization",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030578",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26781,
            "identifier": "157869",
            "identifier_type": "int",
            "name": "SBSPON",
            "properties": {
                "url": "http://identifiers.org/ncbigene/157869",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "somatomedin B and thrombospondin, type 1 domain containing"
            },
            "metanode": "Gene"
        },
        {
            "id": 26748,
            "identifier": "DB04877",
            "identifier_type": "str",
            "name": "Voacamine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB04877",
                "inchi": "InChI=1S/C43H52N4O5/c1-7-24-15-23-20-43(42(49)52-6)39-27(13-14-47(21-23)40(24)43)29-19-36(50-4)30(17-34(29)45-39)31-16-28-25(8-2)22-46(3)35(37(28)41(48)51-5)18-32-26-11-9-10-12-33(26)44-38(31)32/h8-12,17,19,23-24,28,31,35,37,40,44-45H,7,13-16,18,20-22H2,1-6H3/b25-8-/t23-,24-,28-,31+,35+,37?,40-,43+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VCMIRXRRQJNZJT-XRMSBCOFSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 26749,
            "identifier": "GO:0038098",
            "identifier_type": "str",
            "name": "sequestering of BMP from receptor via BMP binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0038098",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26750,
            "identifier": "1514",
            "identifier_type": "int",
            "name": "CTSL",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1514",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "cathepsin L"
            },
            "metanode": "Gene"
        },
        {
            "id": 26751,
            "identifier": "10021",
            "identifier_type": "int",
            "name": "HCN4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10021",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "hyperpolarization activated cyclic nucleotide gated potassium channel 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 26752,
            "identifier": "PC7_1810",
            "identifier_type": "str",
            "name": "Assembly Of The HIV Virion",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 26753,
            "identifier": "201191",
            "identifier_type": "int",
            "name": "SAMD14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/201191",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "sterile alpha motif domain containing 14"
            },
            "metanode": "Gene"
        },
        {
            "id": 26754,
            "identifier": "3855",
            "identifier_type": "int",
            "name": "KRT7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3855",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "keratin 7, type II"
            },
            "metanode": "Gene"
        },
        {
            "id": 26755,
            "identifier": "GO:0032780",
            "identifier_type": "str",
            "name": "negative regulation of ATPase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032780",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26756,
            "identifier": "105377821",
            "identifier_type": "int",
            "name": "LOC105377821",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105377821",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "collagen alpha-2(I) chain-like"
            },
            "metanode": "Gene"
        },
        {
            "id": 26757,
            "identifier": "2212",
            "identifier_type": "int",
            "name": "FCGR2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2212",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "Fc fragment of IgG, low affinity IIa, receptor (CD32)"
            },
            "metanode": "Gene"
        },
        {
            "id": 26758,
            "identifier": "10975",
            "identifier_type": "int",
            "name": "UQCR11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10975",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "ubiquinol-cytochrome c reductase, complex III subunit XI"
            },
            "metanode": "Gene"
        },
        {
            "id": 26759,
            "identifier": "4665",
            "identifier_type": "int",
            "name": "NAB2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4665",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "NGFI-A binding protein 2 (EGR1 binding protein 2)"
            },
            "metanode": "Gene"
        },
        {
            "id": 26760,
            "identifier": "WP61_r78592",
            "identifier_type": "str",
            "name": "Notch Signaling Pathway",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP61_r78592",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 26761,
            "identifier": "GO:0010871",
            "identifier_type": "str",
            "name": "negative regulation of receptor biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0010871",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26762,
            "identifier": "C0038999",
            "identifier_type": "str",
            "name": "Swelling",
            "properties": {
                "url": "http://identifiers.org/umls/C0038999",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 26763,
            "identifier": "284904",
            "identifier_type": "int",
            "name": "SEC14L4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/284904",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "SEC14-like 4 (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 26764,
            "identifier": "GO:0048599",
            "identifier_type": "str",
            "name": "oocyte development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0048599",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 26765,
            "identifier": "7262",
            "identifier_type": "int",
            "name": "PHLDA2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7262",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "pleckstrin homology-like domain, family A, member 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 26766,
            "identifier": "DB00663",
            "identifier_type": "str",
            "name": "Flumethasone Pivalate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00663",
                "inchi": "InChI=1S/C27H36F2O6/c1-14-9-16-17-11-19(28)18-10-15(30)7-8-24(18,5)26(17,29)20(31)12-25(16,6)27(14,34)21(32)13-35-22(33)23(2,3)4/h7-8,10,14,16-17,19-20,31,34H,9,11-13H2,1-6H3/t14-,16+,17+,19+,20+,24+,25+,26+,27+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JWRMHDSINXPDHB-OJAGFMMFSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 26767,
            "identifier": "92235",
            "identifier_type": "int",
            "name": "DUSP27",
            "properties": {
                "url": "http://identifiers.org/ncbigene/92235",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "dual specificity phosphatase 27 (putative)"
            },
            "metanode": "Gene"
        }
    ]
}